SMTL ID : 1rem.1

HUMAN LYSOZYME WITH MAN-B1,4-GLCNAC COVALENTLY ATTACHED TO ASP53

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-BMA.1: 10 residues within 4Å: Chain A: Q.58, I.59, N.60, Y.63, W.64, D.102, Q.104, A.108, W.109 Ligands: PGR.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.102, A:Q.104, A:Q.104, A:N.60, A:N.60, A:Q.104, A:A.108 Hydrophobic interactions: A:W.109

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 5 residues within 4Å: Chain A: E.4, R.5, C.6, E.7, R.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.6, A:E.7, A:R.10

1 x PGR: R-1,2-PROPANEDIOL(Covalent)

PGR.3: 5 residues within 4Å: Chain A: N.46, D.53, Q.58, N.60 Ligands: NAG-BMA.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.53 Hydrogen bonds: A:N.60, A:A.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muraki, M. et al., X-ray structure of human lysozyme labelled with 2',3'-epoxypropyl beta-glycoside of man-beta1,4-GlcNAc. Structural change and recognition specificity at subsite B. Acta Crystallogr.,Sect.D (1998)

Release Date

1998-07-15

Peptides

LYSOZYME: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LYSOZYME

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