SMTL ID : 1rjn.1

The Crystal Structure of MenB (Rv0548c) from Mycobacterium tuberculosis in Complex with the CoA Portion of Naphthoyl CoA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

2 x COA: COENZYME A(Non-covalent)

COA.1: 10 residues within 4Å: Chain B: V.82, R.83, A.85, K.120, S.128, G.130, D.131, Q.132, W.182, A.184 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.182, B:W.182, B:A.184 Hydrogen bonds: B:S.128, B:S.128, B:Q.132 Salt bridges: B:R.83, B:K.120 COA.3: 10 residues within 4Å: Chain E: V.82, R.83, A.85, K.120, S.128, G.130, D.131, Q.132, W.182, A.184 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:W.182, E:W.182, E:A.184 Hydrogen bonds: E:S.128, E:S.128, E:Q.132 Salt bridges: E:R.83, E:K.120

2 x EP1: 3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID(Non-covalent)

EP1.2: 19 residues within 4Å: Chain A: A.226, R.227, Q.228, V.229, G.230 Chain B: A.226, R.227, Q.228, V.229, F.233, Q.251, M.252 Chain C: A.226, R.227, Q.228, V.229, G.230, Q.251, M.252 10 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B, 3 interactions with chain C Water bridges: A:R.227, A:Q.231, B:R.227, B:R.227, C:R.227, C:Q.231 Salt bridges: A:R.227, B:R.227, C:R.227 Hydrogen bonds: B:Q.251 EP1.4: 19 residues within 4Å: Chain D: A.226, R.227, Q.228, V.229, G.230 Chain E: A.226, R.227, Q.228, V.229, F.233, Q.251, M.252 Chain F: A.226, R.227, Q.228, V.229, G.230, Q.251, M.252 10 PLIP interactions: 4 interactions with chain E, 3 interactions with chain F, 3 interactions with chain D Hydrogen bonds: E:Q.251 Water bridges: E:R.227, E:R.227, F:R.227, F:Q.231, D:R.227, D:Q.231 Salt bridges: E:R.227, F:R.227, D:R.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnston, J.M. et al., Structure of naphthoate synthase (MenB) from Mycobacterium tuberculosis in both native and product-bound forms. Acta Crystallogr.,Sect.D (2005)

Release Date

2004-11-30

Peptides

menB: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

menB

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