SMTL ID : 1rjn.1

The Crystal Structure of MenB (Rv0548c) from Mycobacterium tuberculosis in Complex with the CoA Portion of Naphthoyl CoA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

2 x COA: COENZYME A(Non-covalent)

COA.1: 10 residues within 4Å: Chain B: V.82, R.83, A.85, K.120, S.128, G.130, D.131, Q.132, W.182, A.184 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.182, B:W.182, B:A.184 Hydrogen bonds: B:S.128, B:S.128, B:Q.132 Salt bridges: B:R.83, B:K.120 COA.3: 10 residues within 4Å: Chain E: V.82, R.83, A.85, K.120, S.128, G.130, D.131, Q.132, W.182, A.184 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:W.182, E:W.182, E:A.184 Hydrogen bonds: E:S.128, E:S.128, E:Q.132 Salt bridges: E:R.83, E:K.120

2 x EP1: 3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID(Non-covalent)

EP1.2: 19 residues within 4Å: Chain A: A.226, R.227, Q.228, V.229, G.230 Chain B: A.226, R.227, Q.228, V.229, F.233, Q.251, M.252 Chain C: A.226, R.227, Q.228, V.229, G.230, Q.251, M.252 10 PLIP interactions: 3 interactions with chain A, 3 interactions with chain C, 4 interactions with chain B Salt bridges: A:R.227, C:R.227, B:R.227 Water bridges: A:A.226, A:R.227, C:R.227, C:R.227, B:R.227, B:R.227 Hydrogen bonds: B:Q.251 EP1.4: 19 residues within 4Å: Chain D: A.226, R.227, Q.228, V.229, G.230 Chain E: A.226, R.227, Q.228, V.229, F.233, Q.251, M.252 Chain F: A.226, R.227, Q.228, V.229, G.230, Q.251, M.252 10 PLIP interactions: 4 interactions with chain E, 3 interactions with chain D, 3 interactions with chain F Hydrogen bonds: E:Q.251 Salt bridges: E:R.227, D:R.227, F:R.227 Water bridges: E:R.227, E:R.227, D:A.226, D:R.227, F:R.227, F:R.227

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Johnston, J.M. et al., The Crystal Structure of MenB (Rv0548c) from Mycobacterium tuberculosis in Complex with the CoA Portion of Naphthoyl CoA. To be Published

Release Date

2004-11-30

Peptides

menB: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

menB

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