- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x D6P: (3,4,5,7-TETRAHYDROXY-HEPT-1-ENYL)-PHOSPHONIC ACID(Non-covalent)
D6P.2: 17 residues within 4Å:- Chain A: K.322, S.323, G.324, Q.325, T.326, K.327, N.350, L.352, D.356, L.360, K.369, K.373, I.402, K.412, D.438, K.489
- Ligands: NAI.3
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:L.352, A:L.360
- Hydrogen bonds: A:S.323, A:G.324, A:Q.325, A:T.326, A:T.326, A:T.326, A:K.327, A:D.356, A:K.369, A:K.369, A:K.373, A:K.412, A:D.438, A:K.489
- Water bridges: A:D.356, A:D.356
D6P.6: 17 residues within 4Å:- Chain C: K.322, S.323, G.324, Q.325, T.326, K.327, N.350, L.352, D.356, L.360, K.369, K.373, I.402, K.412, D.438, K.489
- Ligands: NAI.7
17 PLIP interactions:17 interactions with chain C- Hydrophobic interactions: C:L.352, C:L.360
- Hydrogen bonds: C:S.323, C:G.324, C:Q.325, C:T.326, C:T.326, C:K.327, C:D.356, C:K.369, C:K.369, C:K.373, C:K.412, C:D.438, C:K.489
- Water bridges: C:D.438, C:D.438
- 4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
NAI.3: 30 residues within 4Å:- Chain A: I.71, G.72, G.74, G.75, N.76, N.77, D.148, I.149, S.184, I.185, R.198, W.243, T.244, A.245, N.246, T.247, P.277, G.295, S.296, D.320, L.321, S.323, N.355, D.356, K.369, D.438, A.442, K.489
- Ligands: MN.1, D6P.2
29 PLIP interactions:29 interactions with chain A- Hydrophobic interactions: A:L.321, A:A.442
- Hydrogen bonds: A:G.74, A:N.76, A:N.77, A:N.77, A:I.149, A:S.184, A:I.185, A:R.198, A:R.198, A:A.245, A:N.246, A:N.246, A:T.247, A:S.323, A:N.355, A:D.356, A:D.356, A:D.356
- Water bridges: A:G.75, A:G.78, A:Y.187, A:T.247, A:T.247, A:N.354, A:N.355, A:N.355, A:D.356
NAI.4: 30 residues within 4Å:- Chain B: I.71, G.72, G.74, G.75, N.76, N.77, D.148, I.149, S.184, I.185, I.191, R.198, W.243, T.244, A.245, N.246, T.247, P.277, G.295, S.296, P.297, D.320, L.321, S.323, N.355, D.356, K.369, D.438, A.442, K.489
25 PLIP interactions:25 interactions with chain B- Hydrophobic interactions: B:L.321
- Hydrogen bonds: B:G.72, B:G.74, B:G.74, B:N.76, B:N.77, B:N.77, B:I.149, B:S.184, B:I.185, B:R.198, B:T.244, B:N.246, B:N.246, B:T.247, B:T.247, B:D.356
- Water bridges: B:G.75, B:N.76, B:N.76, B:Y.187, B:R.198, B:N.354, B:N.355, B:N.355
NAI.7: 30 residues within 4Å:- Chain C: I.71, G.72, G.74, G.75, N.76, N.77, D.148, I.149, S.184, I.185, R.198, W.243, T.244, A.245, N.246, T.247, P.277, G.295, S.296, D.320, L.321, S.323, N.355, D.356, K.369, D.438, A.442, K.489
- Ligands: MN.5, D6P.6
29 PLIP interactions:29 interactions with chain C- Hydrophobic interactions: C:L.321, C:A.442
- Hydrogen bonds: C:G.74, C:N.76, C:N.77, C:N.77, C:I.149, C:S.184, C:I.185, C:R.198, C:R.198, C:T.244, C:A.245, C:N.246, C:N.246, C:S.323, C:N.355, C:D.356, C:D.356
- Water bridges: C:G.75, C:G.78, C:Y.187, C:T.247, C:N.355, C:N.355, C:D.356, C:D.356, C:D.438, C:D.438
NAI.8: 30 residues within 4Å:- Chain D: I.71, G.72, G.74, G.75, N.76, N.77, D.148, I.149, S.184, I.185, I.191, R.198, W.243, T.244, A.245, N.246, T.247, P.277, G.295, S.296, P.297, D.320, L.321, S.323, N.355, D.356, K.369, D.438, A.442, K.489
26 PLIP interactions:26 interactions with chain D- Hydrophobic interactions: D:L.321
- Hydrogen bonds: D:G.72, D:G.74, D:G.74, D:N.76, D:N.77, D:N.77, D:I.149, D:S.184, D:I.185, D:R.198, D:N.246, D:N.246, D:T.247, D:T.247, D:T.247, D:D.356
- Water bridges: D:G.75, D:N.76, D:N.76, D:Y.187, D:R.198, D:N.354, D:N.355, D:N.355, D:D.356
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jin, X. et al., The structure of the 1L-myo-inositol-1-phosphate synthase-NAD+-2-deoxy-D-glucitol 6-(E)-vinylhomophosphonate complex demands a revision of the enzyme mechanism. J.Biol.Chem. (2004)
- Release Date
- 2004-05-25
- Peptides
- myo-inositol-phosphate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x D6P: (3,4,5,7-TETRAHYDROXY-HEPT-1-ENYL)-PHOSPHONIC ACID(Non-covalent)
- 4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jin, X. et al., The structure of the 1L-myo-inositol-1-phosphate synthase-NAD+-2-deoxy-D-glucitol 6-(E)-vinylhomophosphonate complex demands a revision of the enzyme mechanism. J.Biol.Chem. (2004)
- Release Date
- 2004-05-25
- Peptides
- myo-inositol-phosphate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B