SMTL ID : 1rrp.3 (3 other biounits)

STRUCTURE OF THE RAN-GPPNHP-RANBD1 COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.96 Å

Oligo State

hetero-4-4-mer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.17, V.33, T.35 Ligands: GNP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.17, A:T.35 MG.3: 4 residues within 4Å: Chain C: T.17, V.33, T.35 Ligands: GNP.4 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.17, C:T.35 MG.5: 4 residues within 4Å: Chain E: T.17, V.33, T.35 Ligands: GNP.6 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:T.17, E:T.35 MG.7: 4 residues within 4Å: Chain G: T.17, V.33, T.35 Ligands: GNP.8 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:T.17, G:T.35

4 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 25 residues within 4Å: Chain A: G.12, G.13, T.14, G.15, K.16, T.17, T.18, F.28, E.29, K.30, K.31, Y.32, A.34, T.35, T.59, A.60, G.61, N.115, K.116, D.118, I.119, S.143, A.144, K.145 Ligands: MG.1 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.13, A:G.15, A:K.16, A:K.16, A:K.16, A:K.16, A:T.17, A:T.17, A:T.18, A:T.18, A:E.29, A:T.35, A:T.35, A:T.59, A:N.115, A:K.116, A:K.116, A:K.145 Salt bridges: A:D.118 pi-Stacking: A:F.28 pi-Cation interactions: A:K.116, A:K.116 GNP.4: 25 residues within 4Å: Chain C: G.12, G.13, T.14, G.15, K.16, T.17, T.18, F.28, E.29, K.30, K.31, Y.32, A.34, T.35, T.59, A.60, G.61, N.115, K.116, D.118, I.119, S.143, A.144, K.145 Ligands: MG.3 23 PLIP interactions: 23 interactions with chain C Hydrogen bonds: C:G.13, C:T.14, C:G.15, C:K.16, C:K.16, C:K.16, C:K.16, C:T.17, C:T.18, C:T.18, C:E.29, C:Y.32, C:T.35, C:T.35, C:T.59, C:N.115, C:K.116, C:K.116, C:K.145 Salt bridges: C:D.118 pi-Stacking: C:F.28 pi-Cation interactions: C:K.116, C:K.116 GNP.6: 25 residues within 4Å: Chain E: G.12, G.13, T.14, G.15, K.16, T.17, T.18, F.28, E.29, K.30, K.31, Y.32, A.34, T.35, T.59, A.60, G.61, N.115, K.116, D.118, I.119, S.143, A.144, K.145 Ligands: MG.5 23 PLIP interactions: 23 interactions with chain E Hydrogen bonds: E:G.13, E:T.14, E:G.15, E:K.16, E:K.16, E:K.16, E:K.16, E:T.17, E:T.18, E:T.18, E:E.29, E:Y.32, E:T.35, E:T.35, E:T.59, E:N.115, E:K.116, E:K.116, E:K.145 Salt bridges: E:D.118 pi-Stacking: E:F.28 pi-Cation interactions: E:K.116, E:K.116 GNP.8: 25 residues within 4Å: Chain G: G.12, G.13, T.14, G.15, K.16, T.17, T.18, F.28, E.29, K.30, K.31, Y.32, A.34, T.35, T.59, A.60, G.61, N.115, K.116, D.118, I.119, S.143, A.144, K.145 Ligands: MG.7 22 PLIP interactions: 22 interactions with chain G Hydrogen bonds: G:G.13, G:G.15, G:K.16, G:K.16, G:K.16, G:K.16, G:T.17, G:T.17, G:T.18, G:T.18, G:E.29, G:T.35, G:T.35, G:T.59, G:N.115, G:K.116, G:K.116, G:K.145 Salt bridges: G:D.118 pi-Stacking: G:F.28 pi-Cation interactions: G:K.116, G:K.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetter, I.R. et al., Structure of a Ran-binding domain complexed with Ran bound to a GTP analogue: implications for nuclear transport. Nature (1999)

Release Date

1999-05-18

Peptides

RAN: ACEG
NUCLEAR PORE COMPLEX PROTEIN NUP358: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
A

G
C

B
B

D
D

F
B

H
D

RAN

NUCLEAR PORE COMPLEX PROTEIN NUP358

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