SMTL ID : 1rrp.4 (3 other biounits)

STRUCTURE OF THE RAN-GPPNHP-RANBD1 COMPLEX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.96 Å

Oligo State

hetero-2-2-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.17, V.33, T.35 Ligands: GNP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.17, A:T.35 MG.3: 4 residues within 4Å: Chain C: T.17, V.33, T.35 Ligands: GNP.4 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.17, C:T.35

2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 25 residues within 4Å: Chain A: G.12, G.13, T.14, G.15, K.16, T.17, T.18, F.28, E.29, K.30, K.31, Y.32, A.34, T.35, T.59, A.60, G.61, N.115, K.116, D.118, I.119, S.143, A.144, K.145 Ligands: MG.1 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.13, A:G.15, A:K.16, A:K.16, A:K.16, A:K.16, A:T.17, A:T.17, A:T.18, A:T.18, A:E.29, A:T.35, A:T.35, A:T.59, A:N.115, A:K.116, A:K.116, A:K.145 Salt bridges: A:D.118 pi-Stacking: A:F.28 pi-Cation interactions: A:K.116, A:K.116 GNP.4: 25 residues within 4Å: Chain C: G.12, G.13, T.14, G.15, K.16, T.17, T.18, F.28, E.29, K.30, K.31, Y.32, A.34, T.35, T.59, A.60, G.61, N.115, K.116, D.118, I.119, S.143, A.144, K.145 Ligands: MG.3 22 PLIP interactions: 22 interactions with chain C Hydrogen bonds: C:G.13, C:G.15, C:K.16, C:K.16, C:K.16, C:K.16, C:T.17, C:T.17, C:T.18, C:T.18, C:E.29, C:T.35, C:T.35, C:T.59, C:N.115, C:K.116, C:K.116, C:K.145 Salt bridges: C:D.118 pi-Stacking: C:F.28 pi-Cation interactions: C:K.116, C:K.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetter, I.R. et al., Structure of a Ran-binding domain complexed with Ran bound to a GTP analogue: implications for nuclear transport. Nature (1999)

Release Date

1999-05-18

Peptides

RAN: AC
NUCLEAR PORE COMPLEX PROTEIN NUP358: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

RAN

NUCLEAR PORE COMPLEX PROTEIN NUP358

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