SMTL ID : 1rv8.2 (1 other biounit)

Class II fructose-1,6-bisphosphate aldolase from Thermus aquaticus in complex with cobalt

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: G.209, A.210, S.211, N.251, D.253, T.254 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.209, A:A.210, A:S.211, A:S.211, A:S.211, A:D.253, A:T.254, A:T.254 SO4.2: 3 residues within 4Å: Chain A: R.116, V.119, H.123 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.116, A:R.116 Salt bridges: A:R.116, A:H.123 SO4.5: 4 residues within 4Å: Chain A: R.278 Chain B: S.49, G.51, R.257 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Salt bridges: A:R.278, B:R.257 Hydrogen bonds: B:S.49, B:G.51 Water bridges: B:E.50 SO4.6: 6 residues within 4Å: Chain B: G.209, A.210, S.211, N.251, D.253, T.254 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.209, B:S.211, B:D.253, B:T.254, B:T.254, B:T.254 Water bridges: B:D.255 SO4.7: 4 residues within 4Å: Chain A: S.49, G.51, R.257 Chain B: R.278 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.49, A:G.51 Water bridges: A:N.23, A:E.50, A:R.257 Salt bridges: A:R.257, B:R.278 SO4.8: 2 residues within 4Å: Chain B: R.116, H.123 5 PLIP interactions: 5 interactions with chain B Water bridges: B:R.116, B:R.116, B:H.123 Salt bridges: B:R.116, B:H.123

2 x CO: COBALT (II) ION(Non-covalent)

CO.3: 4 residues within 4Å: Chain A: H.81, E.132, H.178, H.208 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.81, A:E.132, A:H.178, A:H.208, H2O.1 CO.9: 4 residues within 4Å: Chain B: H.81, E.132, H.178, H.208 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.81, B:E.132, B:H.178, B:H.208, H2O.10

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: H.78, D.80, E.130, H.208, K.249, N.251 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.80, A:H.81, A:H.81, A:K.249 NA.10: 6 residues within 4Å: Chain B: H.78, D.80, E.130, H.208, K.249, N.251 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.78, B:K.249, B:N.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Izard, T. et al., Induced Fit Movements and Metal Cofactor Selectivity of Class II Aldolases: STRUCTURE OF THERMUS AQUATICUS FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE. J.Biol.Chem. (2004)

Release Date

2004-01-27

Peptides

fructose-1,6-bisphosphate aldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

fructose-1,6-bisphosphate aldolase

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