SMTL ID : 1rvg.1 (1 other biounit)

crystal structure of class II fructose-bisphosphate aldolase from Thermus aquaticus in complex with Y

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.49, G.51, D.253, R.257 Chain B: R.278 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.49, A:G.51 Water bridges: A:N.23, A:S.49, A:E.50, A:D.253, A:D.253 Salt bridges: A:R.257, B:R.278 SO4.2: 8 residues within 4Å: Chain A: H.178, G.179, K.182, G.209, A.210, S.211, D.253, T.254 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.179, A:G.209, A:S.211, A:S.211, A:S.211, A:D.253, A:T.254, A:T.254 Salt bridges: A:K.182 SO4.3: 6 residues within 4Å: Chain A: S.104, H.105, E.132, R.135, L.136 Ligands: YT3.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.104, A:L.136 Water bridges: A:L.136 Salt bridges: A:R.135 SO4.8: 4 residues within 4Å: Chain A: R.278 Chain B: S.49, G.51, R.257 9 PLIP interactions: 2 interactions with chain A, 7 interactions with chain B Water bridges: A:R.278, B:N.23, B:E.50, B:R.257 Salt bridges: A:R.278, B:R.257 Hydrogen bonds: B:S.49, B:S.49, B:G.51 SO4.9: 7 residues within 4Å: Chain B: G.209, A.210, S.211, N.251, T.252, D.253, T.254 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:A.210, B:S.211, B:D.253, B:T.254, B:T.254 Water bridges: B:G.209, B:T.254 SO4.10: 3 residues within 4Å: Chain B: R.116, H.123, G.166 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.166 Salt bridges: B:R.116, B:H.123

3 x CO: COBALT (II) ION(Non-covalent)

CO.4: 4 residues within 4Å: Chain A: H.81, H.178, H.208 Ligands: CO.6 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.81, A:H.178, A:H.208, H2O.6, H2O.9 CO.6: 5 residues within 4Å: Chain A: H.81, L.136, H.178, H.208 Ligands: CO.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.81, A:H.178, A:H.208, H2O.7 CO.11: 4 residues within 4Å: Chain B: H.81, E.132, H.178, H.208 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.81, B:E.132, B:E.132, B:H.178, B:H.208

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 7 residues within 4Å: Chain A: H.78, D.80, M.100, E.130, H.208, K.249, N.251 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.78, A:K.249, A:N.251 NA.12: 7 residues within 4Å: Chain B: H.78, D.80, M.100, E.130, H.208, K.249, N.251 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.78, B:H.81, B:K.249, B:N.251

1 x YT3: YTTRIUM (III) ION(Non-covalent)

YT3.7: 4 residues within 4Å: Chain A: D.102, S.104, E.132 Ligands: SO4.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Izard, T. et al., Induced Fit Movements and Metal Cofactor Selectivity of Class II Aldolases: STRUCTURE OF THERMUS AQUATICUS FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE. J.Biol.Chem. (2004)

Release Date

2004-01-27

Peptides

fructose-1,6-bisphosphate aldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

fructose-1,6-bisphosphate aldolase

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