- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.3: 27 residues within 4Å:- Chain A: T.38, A.93, A.96, F.97, W.100, E.104, I.117, A.120, F.121, F.123, A.124, Y.128, Y.148, G.149, I.150, H.153, V.241
- Chain B: Y.210, A.213, L.214, A.217, M.218, W.252, M.256
- Ligands: BCL.2, BCL.8, U10.10
17 PLIP interactions:14 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:A.93, A:A.96, A:A.120, A:F.121, A:F.121, A:F.123, A:A.124, A:Y.128, A:Y.148, A:Y.148, A:Y.148, A:V.241, A:V.241, B:Y.210, B:A.213, B:A.217
- pi-Stacking: A:F.121
BPH.9: 26 residues within 4Å:- Chain A: F.181, A.184, L.185, L.189, F.216, L.219, V.220
- Chain B: S.59, L.60, G.63, L.64, F.67, A.125, V.126, W.129, T.133, T.146, A.149, F.150, A.153, A.273, V.274, T.277
- Ligands: BCL.1, U10.4, BCL.7
13 PLIP interactions:10 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:L.60, B:L.64, B:F.67, B:A.125, B:W.129, B:A.149, B:F.150, B:F.150, B:T.277, A:A.184, A:L.185, A:L.189
- pi-Stacking: B:F.150
- 2 x U10: UBIQUINONE-10(Non-covalent)
U10.4: 19 residues within 4Å:- Chain A: A.186, L.189, H.190, L.193, F.216, V.220, G.221, Y.222, S.223, I.224, I.229, L.232
- Chain B: S.30, G.31, V.32, G.33, G.48, I.50
- Ligands: BPH.9
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.189, A:Y.222, A:Y.222, A:L.232, B:I.50
- Hydrogen bonds: A:I.224, A:G.225
- pi-Stacking: A:F.216
U10.10: 27 residues within 4Å:- Chain A: F.29, G.35, T.38, F.39, W.100, R.103
- Chain B: L.214, M.218, H.219, T.222, I.223, A.248, A.249, W.252, M.256, F.258, N.259, A.260, T.261, M.262, I.265, W.268, M.272
- Ligands: BPH.3, BCL.8, LDA.13, LDA.15
17 PLIP interactions:5 interactions with chain A, 12 interactions with chain B- Hydrophobic interactions: A:F.29, A:F.29, A:F.29, A:T.38, A:W.100, B:L.214, B:M.218, B:W.252, B:M.256, B:F.258, B:F.258, B:A.260, B:I.265, B:W.268, B:W.268
- Hydrogen bonds: B:T.222, B:A.260
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x SPO: SPHEROIDENE(Non-covalent)
SPO.11: 26 residues within 4Å:- Chain B: F.67, F.68, I.70, G.71, F.74, W.75, F.85, L.89, W.115, L.116, S.119, F.120, M.122, F.123, W.157, M.158, L.160, G.161, F.162, W.171, V.175, Y.177, G.178, I.179, H.182
- Ligands: BCL.1
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:F.67, B:F.67, B:F.67, B:F.68, B:I.70, B:I.70, B:F.74, B:F.85, B:L.89, B:W.115, B:L.116, B:F.123, B:W.157, B:L.160, B:F.162, B:W.171, B:V.175, B:V.175, B:Y.177, B:Y.177, B:I.179, B:H.182
- 3 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.12: 8 residues within 4Å:- Chain B: P.200, A.207, F.208, W.268
- Chain C: W.21, L.24
- Ligands: BCL.8, LDA.15
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain B- Hydrophobic interactions: C:W.21, C:L.24, B:A.207, B:W.268
- Hydrogen bonds: B:P.200
LDA.13: 7 residues within 4Å:- Chain A: P.28, F.29
- Chain B: M.256, G.257
- Ligands: BCL.8, U10.10, LDA.15
No protein-ligand interaction detected (PLIP)LDA.15: 10 residues within 4Å:- Chain B: G.257, F.258, W.268
- Chain C: Q.32, Y.40, Q.53, F.56
- Ligands: U10.10, LDA.12, LDA.13
8 PLIP interactions:4 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:F.56, B:F.258, B:F.258, B:F.258, B:W.268
- Hydrogen bonds: C:Y.40, C:Y.40
- Water bridges: C:Q.32
- 1 x CDL: CARDIOLIPIN(Non-covalent)
CDL.14: 18 residues within 4Å:- Chain A: N.199, P.200
- Chain B: G.143, K.144, H.145, W.148, R.267, I.270, W.271, V.274, L.278, I.282
- Chain C: F.20, I.22, F.23, G.26, L.27, Y.30
24 PLIP interactions:16 interactions with chain B, 7 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: B:W.148, B:W.148, B:W.148, B:I.270, B:V.274, B:L.278, B:L.278, B:I.282, C:I.22, C:F.23, C:F.23, C:F.23, C:L.27, C:Y.30, C:Y.30
- Hydrogen bonds: B:K.144, A:N.199
- Water bridges: B:K.144, B:K.144, B:R.267
- Salt bridges: B:H.145, B:H.145, B:H.145, B:R.267
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xu, Q. et al., X-Ray Structure Determination of Three Mutants of the Bacterial Photosynthetic Reaction Centers from Rb. sphaeroides; Altered Proton Transfer Pathways. Structure (2004)
- Release Date
- 2004-04-13
- Peptides
- Reaction center protein L chain: A
Reaction center protein M chain: B
Reaction center protein H chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
H - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
- 2 x U10: UBIQUINONE-10(Non-covalent)
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x SPO: SPHEROIDENE(Non-covalent)
- 3 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
- 1 x CDL: CARDIOLIPIN(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xu, Q. et al., X-Ray Structure Determination of Three Mutants of the Bacterial Photosynthetic Reaction Centers from Rb. sphaeroides; Altered Proton Transfer Pathways. Structure (2004)
- Release Date
- 2004-04-13
- Peptides
- Reaction center protein L chain: A
Reaction center protein M chain: B
Reaction center protein H chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
H - Membrane
-
We predict this structure to be a membrane protein.