- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x K: POTASSIUM ION(Non-covalent)
K.7: 6 residues within 4Å:- Chain A: E.49, I.69, S.73
- Chain B: E.49, I.69, S.73
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Metal complexes: B:E.49, B:I.69, B:S.73, A:E.49, A:S.73
K.8: 6 residues within 4Å:- Chain E: E.49, I.69, S.73
- Chain F: E.49, I.69, S.73
5 PLIP interactions:2 interactions with chain E, 3 interactions with chain F- Metal complexes: E:E.49, E:I.69, F:E.49, F:I.69, F:S.73
K.9: 6 residues within 4Å:- Chain C: E.49, I.69, S.73
- Chain D: E.49, I.69, S.73
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain D- Metal complexes: C:E.49, C:I.69, C:S.73, D:E.49, D:I.69
- 6 x THM: THYMIDINE(Non-covalent)
THM.10: 17 residues within 4Å:- Chain A: I.69, T.94, T.95, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, E.198, I.220, V.221, P.229
- Chain B: F.7, H.8
- Ligands: PO4.1
11 PLIP interactions:10 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.162, A:I.220, A:V.221, A:P.229
- Hydrogen bonds: A:T.94, A:G.96, A:Q.166, A:Q.166, A:R.168, A:R.168, B:H.8
THM.11: 16 residues within 4Å:- Chain A: H.8
- Chain B: I.69, R.91, T.94, T.95, G.96, F.162, Q.166, R.168, E.196, M.197, E.198, I.220, V.221, P.229
- Ligands: PO4.2
12 PLIP interactions:11 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:F.162, B:M.197, B:I.220, B:V.221, B:P.229
- Hydrogen bonds: B:R.91, B:T.94, B:Q.166, B:Q.166, B:R.168, B:R.168, A:H.8
THM.12: 16 residues within 4Å:- Chain C: I.69, T.94, T.95, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, E.198, I.220, V.221, P.229
- Chain D: H.8
- Ligands: PO4.3
10 PLIP interactions:9 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:F.162, C:I.220, C:V.221, C:P.229
- Hydrogen bonds: C:G.96, C:Q.166, C:Q.166, C:R.168, C:R.168, D:H.8
THM.13: 17 residues within 4Å:- Chain C: H.8
- Chain D: I.69, R.91, T.94, T.95, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, E.198, I.220, V.221, P.229
- Ligands: PO4.4
11 PLIP interactions:1 interactions with chain C, 10 interactions with chain D- Hydrogen bonds: C:H.8, D:R.91, D:Q.166, D:Q.166, D:R.168, D:R.168
- Hydrophobic interactions: D:F.162, D:E.196, D:I.220, D:V.221, D:P.229
THM.14: 16 residues within 4Å:- Chain E: I.69, T.94, T.95, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, E.198, I.220, V.221, P.229
- Chain F: H.8
- Ligands: PO4.5
12 PLIP interactions:11 interactions with chain E, 1 interactions with chain F- Hydrophobic interactions: E:F.162, E:M.197, E:I.220, E:V.221, E:P.229
- Hydrogen bonds: E:T.94, E:G.96, E:Q.166, E:Q.166, E:R.168, E:R.168, F:H.8
THM.15: 15 residues within 4Å:- Chain E: H.8
- Chain F: I.69, T.94, T.95, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, E.198, I.220, V.221
- Ligands: PO4.6
10 PLIP interactions:9 interactions with chain F, 1 interactions with chain E- Hydrophobic interactions: F:E.196, F:M.197, F:I.220, F:V.221
- Hydrogen bonds: F:T.94, F:Q.166, F:Q.166, F:R.168, F:R.168, E:H.8
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Caradoc-Davies, T.T. et al., Crystal structures of escherichia coli uridine phosphorylase in two native and three complexed forms reveal basis of substrate specificity, induced conformational changes and influence of potassium. J.Mol.Biol. (2004)
- Release Date
- 2004-04-13
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
MB
NC
OD
PE
QF
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x K: POTASSIUM ION(Non-covalent)
- 6 x THM: THYMIDINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Caradoc-Davies, T.T. et al., Crystal structures of escherichia coli uridine phosphorylase in two native and three complexed forms reveal basis of substrate specificity, induced conformational changes and influence of potassium. J.Mol.Biol. (2004)
- Release Date
- 2004-04-13
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
MB
NC
OD
PE
QF
R