SMTL ID : 1ryr.1

REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain C: D.7, F.8, D.105 Ligands: CA.2, ATP.3 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.7, C:F.8, C:D.105, H2O.3, H2O.8 CA.2: 3 residues within 4Å: Chain C: D.105 Ligands: CA.1, ATP.3 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.105, C:D.105, H2O.2, H2O.7, H2O.8

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 16 residues within 4Å: Chain A: C.13 Chain B: T.2, T.3, G.4 Chain C: D.7, D.9, Y.10, F.11, A.44, T.45, R.51, G.58, D.105, K.159 Ligands: CA.1, CA.2 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:Y.10, C:F.11, C:T.45, C:T.45, C:T.45 Water bridges: C:D.7, C:Y.12, C:A.46, C:R.51, C:R.51, C:K.152, C:K.159, C:K.159 Salt bridges: C:R.51, C:K.159, C:K.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ling, H. et al., Replication of a Cis-Syn Thymine Dimer at Atomic Resolution. Nature (2003)

Release Date

2004-02-10

Peptides

DNA polymerase IV: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA polymerase IV

Related Entries With Identical Sequence