SMTL ID : 1rz5.1 (1 other biounit)

Di-haem Cytochrome c Peroxidase, Form OUT

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: N.79, T.256, P.258 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.256, A:P.258, H2O.1, H2O.1, H2O.1

2 x HEC: HEME C(Covalent)

HEC.2: 23 residues within 4Å: Chain A: I.49, S.50, C.51, C.54, H.55, S.68, I.69, R.78, N.79, S.80, P.81, A.86, N.89, Q.92, F.93, W.94, P.108, V.109, G.112, V.113, I.156, E.160, R.246 17 PLIP interactions: 16 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:I.49, A:I.69, A:P.81, A:A.86, A:P.108, A:P.108, A:V.109, A:V.113, A:I.156 Hydrogen bonds: A:N.89, A:W.94 Water bridges: A:N.89, A:D.95, A:R.246 Salt bridges: A:R.246 Metal complexes: A:H.55, H2O.3 HEC.3: 24 residues within 4Å: Chain A: W.94, G.196, C.197, C.200, H.201, Y.212, F.214, G.215, L.216, F.245, R.246, A.247, S.248, L.250, I.253, Y.259, F.260, H.261, A.271, V.272, M.275, T.282, L.284, I.292 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:Y.212, A:F.214, A:F.245, A:A.247, A:I.253, A:F.260, A:F.260, A:A.271, A:V.272, A:L.284, A:I.292 Hydrogen bonds: A:L.216, A:S.248, A:F.260, A:H.261 Salt bridges: A:H.261 Metal complexes: A:H.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dias, J.M. et al., Structural basis for the mechanism of Ca(2+) activation of the di-heme cytochrome c peroxidase from Pseudomonas nautica 617. Structure (2004)

Release Date

2004-06-29

Peptides

Cytochrome c peroxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome c peroxidase

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