SMTL ID : 1sgu.1

Comparing the Accumulation of Active Site and Non-active Site Mutations in the HIV-1 Protease

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x MK1: N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE(Non-covalent)

MK1.1: 23 residues within 4Å: Chain A: D.25, G.27, A.28, D.30, I.47, G.48, G.49, I.50, P.81, A.82 Chain B: R.8, D.25, G.27, A.28, D.29, D.30, I.32, I.47, G.48, G.49, I.50, P.81, A.82 23 PLIP interactions: 13 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:A.28, B:D.30, B:I.32, B:I.47, B:I.50, B:I.50, B:P.81, A:A.28, A:I.47, A:I.50, A:P.81, A:A.82 Hydrogen bonds: B:R.8, B:D.25, B:G.27, B:G.27, B:D.29 Salt bridges: B:D.25, A:D.25 Water bridges: A:G.27, A:D.29, A:I.50, A:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clemente, J.C. et al., Comparing the Accumulation of Active- and Nonactive-Site Mutations in the HIV-1 Protease. Biochemistry (2004)

Release Date

2004-10-05

Peptides

POL polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

POL polyprotein

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