SMTL ID : 1sl3.1

crystal structue of Thrombin in complex with a potent P1 heterocycle-Aryl based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 170: (2-[6-CHLORO-3-{[2,2-DIFLUORO-2-(1-OXIDOPYRIDIN-2-YL)ETHYL]AMINO}-2-OXOPYRAZIN-1(2H)-YL]-N-[5-CHLORO-2-(1H-TETRAZOL-1-YL)BENZYL]ACETAMIDE(Non-covalent)

170.1: 21 residues within 4Å: Chain A: H.72, Y.76, W.79, E.123, N.124, L.125, I.208, D.228, A.229, C.230, E.231, S.234, V.254, S.255, W.256, G.257, E.258, G.259, C.260, G.267, F.268 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.125, A:V.254, A:W.256 Hydrogen bonds: A:S.255, A:G.257, A:G.257 Water bridges: A:E.231, A:G.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Young, M.B. et al., Discovery and evaluation of potent P1 aryl heterocycle-based thrombin inhibitors. J.Med.Chem. (2004)

Release Date

2004-08-03

Peptides

thrombin: A
Hirudin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

thrombin

Hirudin

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