SMTL ID : 1so8.1 (1 other biounit)

Abeta-bound human ABAD structure [also known as 3-hydroxyacyl-CoA dehydrogenase type II (Type II HADH), Endoplasmic reticulum-associated amyloid beta-peptide binding protein (ERAB)]

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

8 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: S.67, E.68, K.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.67, A:E.68, A:K.69 NA.2: 2 residues within 4Å: Chain A: G.17, S.20 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.20, A:S.20 NA.4: 3 residues within 4Å: Chain B: S.67, E.68, K.69 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.67, B:E.68, B:K.69 NA.5: 2 residues within 4Å: Chain B: G.17, S.20 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.20, B:S.20 NA.7: 3 residues within 4Å: Chain C: S.67, E.68, K.69 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.67, C:E.68, C:K.69 NA.8: 2 residues within 4Å: Chain C: G.17, S.20 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.20, C:C.91 NA.10: 3 residues within 4Å: Chain D: S.67, E.68, K.69 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.67, D:E.68, D:K.69 NA.11: 2 residues within 4Å: Chain D: G.17, S.20 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.20, D:S.20

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 7 residues within 4Å: Chain A: A.154, S.155, K.172, G.173, G.174, I.175, V.176 Ligand excluded by PLIP CL.6: 7 residues within 4Å: Chain B: A.154, S.155, K.172, G.173, G.174, I.175, V.176 Ligand excluded by PLIP CL.9: 7 residues within 4Å: Chain C: A.154, S.155, K.172, G.173, G.174, I.175, V.176 Ligand excluded by PLIP CL.12: 7 residues within 4Å: Chain D: A.154, S.155, K.172, G.173, G.174, I.175, V.176 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lustbader, J.W. et al., ABAD directly links Abeta to mitochondrial toxicity in Alzheimer's disease. Science (2004)

Release Date

2004-05-11

Peptides

3-hydroxyacyl-CoA dehydrogenase type II: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

3-hydroxyacyl-CoA dehydrogenase type II

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