SMTL ID : 1so8.2 (1 other biounit)

Abeta-bound human ABAD structure [also known as 3-hydroxyacyl-CoA dehydrogenase type II (Type II HADH), Endoplasmic reticulum-associated amyloid beta-peptide binding protein (ERAB)]

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-octamer

Ligands

16 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: S.67, E.68, K.69 Chain H: S.67, E.68, K.69 Ligands: NA.22 Ligand excluded by PLIP NA.2: 2 residues within 4Å: Chain A: G.17, S.20 Ligand excluded by PLIP NA.4: 7 residues within 4Å: Chain B: S.67, E.68, K.69 Chain E: S.67, E.68, K.69 Ligands: NA.13 Ligand excluded by PLIP NA.5: 2 residues within 4Å: Chain B: G.17, S.20 Ligand excluded by PLIP NA.7: 7 residues within 4Å: Chain C: S.67, E.68, K.69 Chain F: S.67, E.68, K.69 Ligands: NA.16 Ligand excluded by PLIP NA.8: 2 residues within 4Å: Chain C: G.17, S.20 Ligand excluded by PLIP NA.10: 7 residues within 4Å: Chain D: S.67, E.68, K.69 Chain G: S.67, E.68, K.69 Ligands: NA.19 Ligand excluded by PLIP NA.11: 2 residues within 4Å: Chain D: G.17, S.20 Ligand excluded by PLIP NA.13: 7 residues within 4Å: Chain B: S.67, E.68, K.69 Chain E: S.67, E.68, K.69 Ligands: NA.4 Ligand excluded by PLIP NA.14: 2 residues within 4Å: Chain E: G.17, S.20 Ligand excluded by PLIP NA.16: 7 residues within 4Å: Chain C: S.67, E.68, K.69 Chain F: S.67, E.68, K.69 Ligands: NA.7 Ligand excluded by PLIP NA.17: 2 residues within 4Å: Chain F: G.17, S.20 Ligand excluded by PLIP NA.19: 7 residues within 4Å: Chain D: S.67, E.68, K.69 Chain G: S.67, E.68, K.69 Ligands: NA.10 Ligand excluded by PLIP NA.20: 2 residues within 4Å: Chain G: G.17, S.20 Ligand excluded by PLIP NA.22: 7 residues within 4Å: Chain A: S.67, E.68, K.69 Chain H: S.67, E.68, K.69 Ligands: NA.1 Ligand excluded by PLIP NA.23: 2 residues within 4Å: Chain H: G.17, S.20 Ligand excluded by PLIP

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 7 residues within 4Å: Chain A: A.154, S.155, K.172, G.173, G.174, I.175, V.176 Ligand excluded by PLIP CL.6: 7 residues within 4Å: Chain B: A.154, S.155, K.172, G.173, G.174, I.175, V.176 Ligand excluded by PLIP CL.9: 7 residues within 4Å: Chain C: A.154, S.155, K.172, G.173, G.174, I.175, V.176 Ligand excluded by PLIP CL.12: 7 residues within 4Å: Chain D: A.154, S.155, K.172, G.173, G.174, I.175, V.176 Ligand excluded by PLIP CL.15: 7 residues within 4Å: Chain E: A.154, S.155, K.172, G.173, G.174, I.175, V.176 Ligand excluded by PLIP CL.18: 7 residues within 4Å: Chain F: A.154, S.155, K.172, G.173, G.174, I.175, V.176 Ligand excluded by PLIP CL.21: 7 residues within 4Å: Chain G: A.154, S.155, K.172, G.173, G.174, I.175, V.176 Ligand excluded by PLIP CL.24: 7 residues within 4Å: Chain H: A.154, S.155, K.172, G.173, G.174, I.175, V.176 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lustbader, J.W. et al., ABAD directly links Abeta to mitochondrial toxicity in Alzheimer's disease. Science (2004)

Release Date

2004-05-11

Peptides

3-hydroxyacyl-CoA dehydrogenase type II: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

3-hydroxyacyl-CoA dehydrogenase type II

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