SMTL ID : 1t4e.1

Structure of Human MDM2 in complex with a Benzodiazepine Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x DIZ: (4-CHLOROPHENYL)[3-(4-CHLOROPHENYL)-7-IODO-2,5-DIOXO-1,2,3,5-TETRAHYDRO-4H-1,4-BENZODIAZEPIN-4-YL]ACETIC ACID(Non-covalent)

DIZ.1: 14 residues within 4Å: Chain A: G.1, S.2, L.39, L.42, G.43, I.46, M.47, Y.52, Q.57, F.76, V.78, H.81, I.84, Y.85 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.39, A:L.42, A:I.46, A:I.46, A:V.78, A:I.84 Water bridges: A:G.43 pi-Stacking: A:H.81 Halogen bonds: A:H.81 DIZ.2: 15 residues within 4Å: Chain B: G.1, S.2, L.39, L.42, G.43, I.46, M.47, Y.52, Q.57, F.71, F.76, V.78, H.81, I.84, Y.85 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.39, B:L.42, B:I.46, B:I.46, B:V.78, B:I.84 Hydrogen bonds: B:S.2 Water bridges: B:G.43 Halogen bonds: B:H.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grasberger, B.L. et al., Discovery and cocrystal structure of benzodiazepinedione HDM2 antagonists that activate p53 in cells. J.Med.Chem. (2005)

Release Date

2005-02-08

Peptides

Ubiquitin-protein ligase E3 Mdm2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin-protein ligase E3 Mdm2

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