SMTL ID : 1t4p.1

Arginase-dehydro-ABH complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-trimer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.96, D.119, D.123, D.227 Ligands: MN.2, 2BH.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.96, A:D.119, A:D.123, A:D.227 MN.2: 6 residues within 4Å: Chain A: D.119, H.121, D.227, D.229 Ligands: MN.1, 2BH.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.119, A:H.121, A:D.227, A:D.229, A:D.229 MN.4: 6 residues within 4Å: Chain B: D.119, H.121, D.227, D.229 Ligands: MN.5, 2BH.6 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.119, B:H.121, B:D.227, B:D.229, B:D.229 MN.5: 6 residues within 4Å: Chain B: H.96, D.119, D.123, D.227 Ligands: MN.4, 2BH.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.96, B:D.119, B:D.123, B:D.227 MN.7: 6 residues within 4Å: Chain C: H.96, D.119, D.123, D.227 Ligands: MN.8, 2BH.9 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.96, C:D.119, C:D.123, C:D.227 MN.8: 6 residues within 4Å: Chain C: D.119, H.121, D.227, D.229 Ligands: MN.7, 2BH.9 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.119, C:H.121, C:D.227, C:D.229, C:D.229

3 x 2BH: [(1E,5S)-5-AMINO-5-CARBOXYPENT-1-ENYL](TRIHYDROXY)BORATE(1-)(Non-covalent)

2BH.3: 15 residues within 4Å: Chain A: H.96, D.119, H.121, D.123, N.125, S.132, H.136, G.137, D.178, E.181, D.227, D.229, E.272 Ligands: MN.1, MN.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:H.121 Hydrogen bonds: A:N.125, A:S.132, A:H.136, A:D.178, A:E.272 Water bridges: A:D.178, A:T.241, A:T.241 2BH.6: 15 residues within 4Å: Chain B: H.96, D.119, H.121, D.123, N.125, S.132, H.136, G.137, D.178, E.181, D.227, D.229, E.272 Ligands: MN.4, MN.5 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:H.121 Hydrogen bonds: B:N.125, B:S.132, B:H.136, B:D.178, B:E.272 Water bridges: B:S.131, B:D.178, B:T.241 2BH.9: 15 residues within 4Å: Chain C: H.96, D.119, H.121, D.123, N.125, S.132, H.136, G.137, D.178, E.181, D.227, D.229, E.272 Ligands: MN.7, MN.8 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:H.121 Hydrogen bonds: C:N.125, C:H.136, C:H.136, C:D.178, C:T.241, C:E.272 Water bridges: C:D.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cama, E. et al., Inhibitor coordination interactions in the binuclear manganese cluster of arginase. Biochemistry (2004)

Release Date

2005-04-12

Peptides

Arginase 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Arginase 1

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