SMTL ID : 1t4r.1

arginase-descarboxy-nor-NOHA complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-trimer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.119, H.121, D.227, D.229 Ligands: MN.2, AHI.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.119, A:H.121, A:D.227, A:D.229, A:D.229 MN.2: 6 residues within 4Å: Chain A: H.96, D.119, D.123, D.227 Ligands: MN.1, AHI.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.96, A:D.119, A:D.123, A:D.227, H2O.2 MN.4: 6 residues within 4Å: Chain B: D.119, H.121, D.227, D.229 Ligands: MN.5, AHI.6 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.119, B:H.121, B:D.227, B:D.229, B:D.229 MN.5: 6 residues within 4Å: Chain B: H.96, D.119, D.123, D.227 Ligands: MN.4, AHI.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.96, B:D.119, B:D.123, B:D.227, H2O.4 MN.7: 6 residues within 4Å: Chain C: D.119, H.121, D.227, D.229 Ligands: MN.8, AHI.9 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.119, C:H.121, C:D.227, C:D.229, C:D.229 MN.8: 6 residues within 4Å: Chain C: H.96, D.119, D.123, D.227 Ligands: MN.7, AHI.9 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.96, C:D.119, C:D.123, C:D.227, H2O.7

3 x AHI: 3-{[(E)-AMINO(HYDROXYIMINO)METHYL]AMINO}PROPAN-1-AMINIUM(Non-covalent)

AHI.3: 13 residues within 4Å: Chain A: D.119, H.121, D.123, N.125, S.132, H.136, G.137, D.178, D.227, D.229, T.241 Ligands: MN.1, MN.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.125, A:D.178, A:T.241 Water bridges: A:S.132, A:H.136, A:T.241, A:T.241 Salt bridges: A:D.123, A:D.229 pi-Cation interactions: A:H.121 AHI.6: 13 residues within 4Å: Chain B: D.119, H.121, D.123, N.125, S.132, H.136, G.137, D.178, D.227, D.229, T.241 Ligands: MN.4, MN.5 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.125, B:D.178, B:T.241, B:T.241 Water bridges: B:S.132, B:H.136, B:H.136, B:T.241 Salt bridges: B:D.123, B:D.229 pi-Cation interactions: B:H.121 AHI.9: 12 residues within 4Å: Chain C: D.119, H.121, D.123, N.125, H.136, G.137, D.178, D.227, D.229, T.241 Ligands: MN.7, MN.8 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:N.125, C:D.178, C:T.241, C:T.241 Water bridges: C:S.131, C:S.132, C:H.136, C:T.241 Salt bridges: C:D.123, C:D.229 pi-Cation interactions: C:H.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cama, E. et al., Inhibitor coordination interactions in the binuclear manganese cluster of arginase. Biochemistry (2004)

Release Date

2005-04-12

Peptides

Arginase 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Arginase 1

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