SMTL ID : 1t7i.1

The structural and thermodynamic basis for the binding of TMC114, a next-generation HIV-1 protease inhibitor.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: D.29, R.87 Chain B: W.6 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.87 Hydrogen bonds: B:W.6 PO4.2: 3 residues within 4Å: Chain A: G.68, H.69, K.70 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.70 PO4.5: 1 residues within 4Å: Chain B: G.16 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.16 Water bridges: B:R.14, B:R.14, B:P.63 PO4.6: 2 residues within 4Å: Chain B: P.39, G.40 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.40 Water bridges: B:G.40

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: K.20, E.21, N.83 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.21, A:E.21, A:N.83 Water bridges: A:K.20 Salt bridges: A:K.20 ACT.7: 2 residues within 4Å: Chain B: K.7, R.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.8 Salt bridges: B:R.8

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.4: 20 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, I.50, T.82 Chain B: D.25, G.27, A.28, D.30, V.32, G.48, G.49, I.50, T.82 17 PLIP interactions: 10 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:L.23, A:I.47, A:T.82, B:A.28, B:V.32 Hydrogen bonds: A:D.25, A:G.27, A:G.27, A:D.29, A:D.30, B:D.29, B:D.30, B:D.30 Water bridges: A:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Surleraux, D.L.N.G. et al., Discovery and selection of TMC114, a next generation HIV-1 protease inhibitor. J.Med.Chem. (2005)

Release Date

2005-05-10

Peptides

Pol Polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pol Polyprotein

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