SMTL ID : 3el5.1

Crystal structure of nelfinavir (NFV) complexed with a multidrug variant (ACT) (V82T/I84V) of HIV-1 protease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

11 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: P.1, H.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.1 Water bridges: A:H.69, A:H.69 Salt bridges: A:H.69 ACT.2: 2 residues within 4Å: Chain A: K.7, R.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.7, A:R.8 ACT.3: 1 residues within 4Å: Chain A: G.17 No protein-ligand interaction detected (PLIP) ACT.4: 5 residues within 4Å: Chain A: E.21, A.22, T.82, N.83 Ligands: ACT.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.83 Hydrogen bonds: A:N.83 Water bridges: A:T.82, A:N.83 ACT.5: 4 residues within 4Å: Chain A: K.20, E.21, N.83 Ligands: ACT.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.21, A:N.83 ACT.6: 2 residues within 4Å: Chain A: M.36, N.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.37, A:N.37 Water bridges: A:Q.18 ACT.8: 1 residues within 4Å: Chain B: P.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.1 ACT.9: 1 residues within 4Å: Chain B: Q.2 No protein-ligand interaction detected (PLIP) ACT.10: 2 residues within 4Å: Chain B: M.36, N.37 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:N.37 Hydrogen bonds: B:N.37 Salt bridges: B:K.20 ACT.11: 1 residues within 4Å: Chain B: R.41 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.41 ACT.12: 3 residues within 4Å: Chain B: G.73, T.74, N.88 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.74, B:N.88 Water bridges: B:Q.92, B:Q.92

1 x 1UN: 2-[2-HYDROXY-3-(3-HYDROXY-2-METHYL-BENZOYLAMINO)-4-PHENYL SULFANYL-BUTYL]-DECAHYDRO-ISOQUINOLINE-3-CARBOXYLIC ACID TERT-BUTYLAMIDE(Non-covalent)

1UN.7: 26 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, T.82 Chain B: D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, T.80, P.81, T.82, V.84 26 PLIP interactions: 13 interactions with chain B, 13 interactions with chain A Hydrophobic interactions: B:A.28, B:D.29, B:I.50, B:I.50, B:P.81, B:V.84, A:L.23, A:A.28, A:D.30, A:V.32, A:I.47, A:I.50, A:I.50, A:P.81, A:T.82 Hydrogen bonds: B:D.25, B:G.27, B:G.27, B:D.30, B:D.30 Water bridges: B:I.50, A:G.27, A:D.29, A:I.50 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, N.M. et al., Extreme Entropy-Enthalpy Compensation in a Drug-Resistant Variant of HIV-1 Protease. Acs Chem.Biol. (2012)

Release Date

2009-09-01

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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