SMTL ID : 1ta2.1

Crystal structure of thrombin in complex with compound 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-oligomer

Ligands

1 x 176: 1-(2-AMINO-3,3-DIPHENYL-PROPIONYL)-PYRROLIDINE-3-CARBOXYLIC ACID 2,5-DICHLORO-BENZYLAMIDE(Non-covalent)

176.1: 20 residues within 4Å: Chain A: H.72, Y.76, W.79, E.123, N.124, L.125, I.208, D.228, A.229, C.230, E.231, S.234, V.254, S.255, W.256, G.257, E.258, G.259, G.267, F.268 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.76, A:L.125, A:L.125, A:I.208, A:A.229, A:V.254, A:W.256, A:E.258 Hydrogen bonds: A:S.234, A:S.255, A:G.257 Water bridges: A:G.257, A:G.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tucker, T.J. et al., Design and synthesis of a series of potent and orally bioavailable noncovalent thrombin inhibitors that utilize nonbasic groups in the P1 position. J.Med.Chem. (1998)

Release Date

2004-06-08

Peptides

thrombin: A
Hirudin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

thrombin

Hirudin

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