SMTL ID : 1tdk.1

L-amino acid oxidase from Agkistrodon halys in complex with suicide substrate L-vinylglycine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.172, Y.175 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.172 NAG.2: 5 residues within 4Å: Chain A: E.337, H.342, N.359, H.360, N.361 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.361, A:N.361

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.3: 36 residues within 4Å: Chain A: V.39, G.40, A.41, G.42, M.43, S.44, L.62, E.63, A.64, G.69, G.70, R.71, V.72, G.87, P.88, M.89, R.90, A.259, Q.260, V.261, C.293, T.294, T.295, A.298, Y.372, W.420, Y.425, G.429, I.430, G.456, E.457, G.464, W.465, I.466, T.469 Ligands: LVG.5 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:Y.372, A:W.420, A:I.430 Hydrogen bonds: A:S.44, A:A.64, A:S.65, A:R.71, A:M.89, A:R.90, A:R.90, A:V.261, A:V.261, A:E.457, A:E.457, A:I.466, A:T.469 Water bridges: A:G.42, A:G.42, A:M.43, A:V.72, A:T.295, A:T.295, A:K.326, A:D.467 Salt bridges: A:R.71, A:R.71

2 x LVG: L-VINYLGLYCINE(Covalent)(Non-covalent)

LVG.4: 7 residues within 4Å: Chain A: R.90, M.207, N.208, H.223, F.227, Y.356 Ligands: LVG.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.227 Hydrogen bonds: A:R.90, A:Y.356 Salt bridges: A:R.90 LVG.5: 8 residues within 4Å: Chain A: R.90, F.227, Y.372, I.374, G.464, W.465 Ligands: FAD.3, LVG.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.374 Hydrogen bonds: A:G.464 Water bridges: A:M.89 Salt bridges: A:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Structures of L-amino acid oxidase in complexes with substrates and substrate analogue. To be Published

Release Date

2004-06-22

Peptides

L-amino acid oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L-amino acid oxidase

Related Entries With Identical Sequence