SMTL ID : 1tdo.1

L-amino acid oxidae from Agkistrodon halys in complex with L-phenylalanine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.172 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain A: H.342, N.359, H.360, N.361 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.361, A:N.361

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.3: 36 residues within 4Å: Chain A: V.39, G.40, A.41, G.42, M.43, S.44, L.62, E.63, A.64, G.69, G.70, R.71, V.72, G.87, P.88, M.89, R.90, A.259, Q.260, V.261, C.293, T.294, T.295, A.298, Y.372, W.420, Y.425, G.429, I.430, G.456, E.457, G.464, W.465, I.466, T.469 Ligands: PHE.4 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:Y.372, A:W.420, A:I.430 Hydrogen bonds: A:M.43, A:S.44, A:A.64, A:R.71, A:M.89, A:R.90, A:R.90, A:V.261, A:V.261, A:E.457, A:E.457, A:I.466, A:T.469 Water bridges: A:G.42, A:G.42, A:T.295, A:T.295, A:D.467, A:T.469 Salt bridges: A:R.71, A:R.71

1 x PHE: PHENYLALANINE(Non-covalent)

PHE.4: 7 residues within 4Å: Chain A: R.90, N.208, H.223, F.227, Y.356, Y.372 Ligands: FAD.3 7 PLIP interactions: 6 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:N.208, A:F.227 Hydrogen bonds: A:H.223, F.4 Water bridges: A:M.89 Salt bridges: A:R.90 pi-Cation interactions: A:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Structures of L-amino acid oxidase in complexes with substrates and substrate analogue. To be Published

Release Date

2004-06-22

Peptides

L-amino acid oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L-amino acid oxidase

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