SMTL ID : 1th2.1

crystal structure of NADPH depleted bovine liver catalase complexed with azide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)

HEM.1: 20 residues within 4Å: Chain A: R.71, V.72, V.73, H.74, R.111, G.130, V.145, G.146, N.147, F.152, F.160, G.215, F.333, M.349, R.353, A.356, Y.357, T.360, H.361, R.364 22 PLIP interactions: 22 interactions with chain A, Hydrophobic interactions: A:R.71, A:V.72, A:V.73, A:H.74, A:V.145, A:F.152, A:F.160, A:M.349, A:R.353, A:A.356, A:Y.357, A:Y.357 Water bridges: A:V.72 Salt bridges: A:R.71, A:R.71, A:R.111, A:H.361, A:R.364 pi-Stacking: A:H.74, A:F.160 pi-Cation interactions: A:R.353 Metal complexes: A:Y.357 HEM.2: 25 residues within 4Å: Chain B: R.71, V.73, H.74, R.111, G.130, A.132, V.145, G.146, N.147, F.152, A.157, F.160, S.216, L.298, F.333, M.349, R.353, A.356, Y.357, T.360, H.361, R.364 Chain C: M.60, F.63, D.64 22 PLIP interactions: 21 interactions with chain B, 1 interactions with chain C, Hydrophobic interactions: B:H.74, B:V.145, B:N.147, B:F.152, B:F.152, B:A.157, B:F.160, B:L.298, B:R.353, B:A.356, B:Y.357, C:F.63 Water bridges: B:S.113 Salt bridges: B:R.71, B:R.71, B:R.111, B:H.361, B:R.364 pi-Stacking: B:H.74, B:F.160 pi-Cation interactions: B:R.353 Metal complexes: B:Y.357 HEM.3: 24 residues within 4Å: Chain B: M.60, D.64 Chain C: R.71, V.72, V.73, H.74, R.111, G.130, F.131, V.145, G.146, N.147, F.152, F.160, S.216, L.298, F.333, M.349, R.353, A.356, Y.357, T.360, H.361, R.364 24 PLIP interactions: 24 interactions with chain C, Hydrophobic interactions: C:V.72, C:V.73, C:H.74, C:V.145, C:N.147, C:F.152, C:F.160, C:F.160, C:F.160, C:F.160, C:L.298, C:R.353, C:A.356, C:Y.357, C:Y.357 Salt bridges: C:R.71, C:R.71, C:R.111, C:H.361, C:R.364 pi-Stacking: C:H.74, C:F.160 pi-Cation interactions: C:R.353 Metal complexes: C:Y.357 HEM.5: 26 residues within 4Å: Chain A: M.60, D.64 Chain D: R.71, V.72, V.73, H.74, R.111, G.130, V.145, G.146, N.147, F.152, A.157, F.160, S.216, H.217, L.298, F.333, M.349, R.353, A.356, Y.357, T.360, H.361, R.364 Ligands: AZI.4 23 PLIP interactions: 23 interactions with chain D, Hydrophobic interactions: D:V.72, D:V.73, D:H.74, D:N.147, D:F.152, D:A.157, D:F.160, D:F.160, D:F.160, D:L.298, D:R.353, D:A.356, D:Y.357 Hydrogen bonds: D:T.360 Water bridges: D:V.72 Salt bridges: D:R.71, D:R.71, D:R.111, D:H.361, D:R.364 pi-Stacking: D:H.74 pi-Cation interactions: D:R.353 Metal complexes: D:Y.357

1 x AZI: AZIDE ION(Non-covalent)

AZI.4: 7 residues within 4Å: Chain D: V.73, H.74, N.147, F.152, F.160, Y.357 Ligands: HEM.5 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugadev, R. et al., The crystal structure of bovine liver catalase. TO BE PUBLISHED

Release Date

2005-07-05

Peptides

Catalase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Catalase

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