SMTL ID : 1tqw.1

Golgi alpha-Mannosidase II In Complex With A Diastereomer of Seleno-Salacinol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: K.154, N.194 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.90, D.92, D.204, H.471 Ligands: BLT.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.90, A:D.92, A:D.204, A:H.471

1 x BLT: 1,4-DIDEOXY-1,4-[[2R,3R)-2,4-DIHYDROXY-3-(SULFOXY)BUTYL]EPISELENONIUMYLIDENE]-D-ARABINITOL INNER SALT(Non-covalent)

BLT.3: 15 residues within 4Å: Chain A: D.92, W.95, D.204, F.206, R.228, Y.269, D.340, D.341, W.415, H.471, D.472, Y.727, R.876, G.877 Ligands: ZN.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.228, A:Y.269, A:D.340, A:D.472, A:Y.727, A:R.876 Water bridges: A:R.228, A:R.228, A:D.270, A:G.877

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.4: 6 residues within 4Å: Chain A: K.63, Q.64, Y.267, H.273, P.279, R.410 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.63, A:K.63, A:Y.267 Water bridges: A:K.63, A:Q.64 MRD.5: 5 residues within 4Å: Chain A: Q.97, Y.102, D.106, D.341, F.342 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuntz, D.A. et al., Insights into the Mechanism of Drosophila melanogaster Golgi a-Mannosidase II Through Crystallographic Analysis of the Interactions with Analogues of the Naturally Occurring Glycomimetic Salacinol. TETRAHEDRON ASYMMETRY (2005)

Release Date

2005-02-01

Peptides

Alpha-mannosidase II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-mannosidase II

Related Entries With Identical Sequence