SMTL ID : 2f7r.1

Golgi alpha-mannosidase II complex with benzyl-aminocyclopentitetrol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.194 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.154, A:N.194, A:N.194

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.90, D.92, D.204, H.471 Ligands: SK3.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.90, A:D.92, A:D.204, A:H.471

1 x SK3: (1R,2R,3S,4S,5R)-5-(BENZYLAMINO)CYCLOPENTANE-1,2,3,4-TETROL(Non-covalent)

SK3.3: 15 residues within 4Å: Chain A: H.90, D.92, W.95, D.204, F.206, R.228, S.268, Y.269, D.270, D.340, D.341, H.471, D.472, Y.727 Ligands: ZN.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.269, A:Y.269, A:D.270 Hydrogen bonds: A:D.204, A:R.228, A:Y.269, A:D.341, A:D.472, A:Y.727

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 6 residues within 4Å: Chain A: K.63, Q.64, Y.267, H.273, P.279, R.410 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.63, A:Q.64, A:Y.267, A:Y.267 Water bridges: A:Q.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawatkar, S.P. et al., Golgi alpha-mannosidase II complex with benzyl-aminocyclopentitetrol. To be Published

Release Date

2006-12-12

Peptides

alpha-mannosidase II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

alpha-mannosidase II

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