SMTL ID : 1tsu.1

CRYSTAL STRUCTURE OF DECAMER NCP1 SUBSTRATE PEPTIDE IN COMPLEX WITH WILD-TYPE D25N HIV-1 PROTEASE VARIANT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x ARG- GLN- ALA- ASN- PHE- LEU- GLY- LYS: NC-P1 SUBSTRATE PEPTIDE(Non-covalent)

ARG-GLN-ALA-ASN-PHE-LEU-GLY-LYS.1: 26 residues within 4Å: Chain A: R.8, L.23, N.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: N.25, G.27, A.28, D.29, D.30, M.46, I.47, G.48, G.49, I.50, P.81, I.84 27 PLIP interactions: 17 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:I.47, A:I.50, A:P.81, A:V.82, A:I.84, B:I.47, B:I.47 Hydrogen bonds: A:G.27, A:G.27, A:D.29, A:D.29, A:D.29, A:D.30, A:G.48, A:G.48, B:N.25, B:G.27, B:D.29, B:D.29, B:D.29, B:G.48, B:G.48, B:I.50 Water bridges: A:I.50, A:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prabu-Jeyabalan, M. et al., Structural basis for coevolution of a human immunodeficiency virus type 1 nucleocapsid-p1 cleavage site with a V82A drug-resistant mutation in viral protease. J.Virol. (2004)

Release Date

2005-03-29

Peptides

Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pol polyprotein

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