- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x MG: MAGNESIUM ION(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 6 x LYS: LYSINE(Non-functional Binders)(Non-covalent)
LYS.3: 0 residues within 4Å:- (No contacts)
2 PLIP interactions:2 Ligand-Ligand interactions- Hydrogen bonds: K.3, K.3
LYS.4: 0 residues within 4Å:- (No contacts)
2 PLIP interactions:2 Ligand-Ligand interactions- Hydrogen bonds: K.4, K.4
LYS.5: 10 residues within 4Å:- Chain A: S.213, R.293, R.329, Y.333, Y.387, M.391
- Chain B: C.358, E.359, Y.395
- Ligands: PLP.2
10 PLIP interactions:4 interactions with chain B, 4 interactions with chain A, 2 Ligand-Ligand interactions- Hydrogen bonds: B:C.358, B:E.359, B:Y.395, K.5, K.5
- Water bridges: B:S.360
- Hydrophobic interactions: A:Y.387, A:Y.387
- Salt bridges: A:R.293, A:R.329
LYS.6: 9 residues within 4Å:- Chain A: R.158, G.174, L.175, N.178, F.180, H.210, I.211, G.212, S.213
10 PLIP interactions:8 interactions with chain A, 2 Ligand-Ligand interactions- Hydrogen bonds: A:G.174, A:H.210, A:S.213, K.6
- Water bridges: A:R.158, A:R.158, A:F.180
- Salt bridges: A:R.158, A:H.210, K.6
LYS.7: 10 residues within 4Å:- Chain A: E.359, Y.395
- Chain B: S.213, R.293, R.329, Y.333, Y.387, M.391
- Ligands: LYS.8, PLP.9
7 PLIP interactions:4 interactions with chain B, 1 interactions with chain A, 2 Ligand-Ligand interactions- Hydrophobic interactions: B:Y.387, B:Y.387
- Salt bridges: B:R.293, B:R.329
- Hydrogen bonds: A:E.359, K.8, K.8
LYS.8: 11 residues within 4Å:- Chain A: S.360
- Chain B: R.158, G.174, L.175, N.178, F.180, H.210, I.211, G.212, S.213
- Ligands: LYS.7
9 PLIP interactions:5 interactions with chain B, 4 Ligand-Ligand interactions- Hydrogen bonds: B:G.174, B:S.213, K.7, K.7
- Water bridges: B:R.158, K.8
- Salt bridges: B:R.158, B:H.210, K.8
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rajashankar, K.R. et al., Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor. Structure (2002)
- Release Date
- 2004-07-27
- Peptides
- Diaminopimelate decarboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x MG: MAGNESIUM ION(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 6 x LYS: LYSINE(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rajashankar, K.R. et al., Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor. Structure (2002)
- Release Date
- 2004-07-27
- Peptides
- Diaminopimelate decarboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D