- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x K: POTASSIUM ION(Non-covalent)
K.2: 6 residues within 4Å:- Chain A: E.52, I.72, S.76
- Chain B: E.52, I.72, S.76
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Metal complexes: A:E.52, A:I.72, B:E.52, B:I.72, B:S.76
K.7: 6 residues within 4Å:- Chain C: E.52, I.72, S.76
- Chain D: E.52, I.72, S.76
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain C- Metal complexes: D:E.52, D:I.72, D:S.76, C:E.52, C:I.72
K.12: 6 residues within 4Å:- Chain E: E.52, I.72, S.76
- Chain F: E.52, I.72, S.76
4 PLIP interactions:2 interactions with chain E, 2 interactions with chain F- Metal complexes: E:I.72, E:S.76, F:I.72, F:S.76
- 6 x 181: 1-((2-HYDROXYETHOXY)METHYL)-5-(PHENYLTHIO)PYRIMIDINE-2,4(1H,3H)-DIONE(Non-covalent)
181.3: 17 residues within 4Å:- Chain A: I.72, T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, E.230, P.232
- Chain B: F.10, H.11, R.51
- Ligands: PO4.1
12 PLIP interactions:4 interactions with chain B, 8 interactions with chain A- Hydrogen bonds: B:H.11, A:Q.169, A:Q.169, A:R.171, A:R.171
- Water bridges: B:R.51, B:R.51, A:R.94
- pi-Stacking: B:F.10, A:F.165
- Hydrophobic interactions: A:I.223, A:P.232
181.5: 17 residues within 4Å:- Chain A: F.10, H.11, R.51
- Chain B: I.72, T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, E.230, P.232
- Ligands: PO4.4
13 PLIP interactions:9 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:I.223
- Hydrogen bonds: B:T.97, B:G.99, B:Q.169, B:Q.169, B:R.171, B:R.171, A:H.11
- Water bridges: B:R.94, A:R.51, A:R.51
- pi-Stacking: B:F.165, A:F.10
181.8: 17 residues within 4Å:- Chain C: I.72, T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, V.224, E.230, P.232
- Chain D: F.10, H.11
- Ligands: PO4.6
13 PLIP interactions:5 interactions with chain D, 8 interactions with chain C- Hydrogen bonds: D:H.11, C:T.97, C:Q.169, C:Q.169, C:R.171, C:R.171
- Water bridges: D:R.51, D:R.51, D:R.51
- pi-Stacking: D:F.10, C:F.165
- Hydrophobic interactions: C:I.223, C:P.232
181.10: 16 residues within 4Å:- Chain C: F.10, H.11
- Chain D: I.72, T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, V.224, E.230
- Ligands: PO4.9
12 PLIP interactions:8 interactions with chain D, 4 interactions with chain C- Hydrophobic interactions: D:I.223, D:V.224
- Hydrogen bonds: D:T.97, D:Q.169, D:Q.169, D:R.171, D:R.171, C:H.11
- pi-Stacking: D:F.165, C:F.10
- Water bridges: C:R.51, C:R.51
181.13: 15 residues within 4Å:- Chain E: I.72, T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, V.224
- Chain F: F.10, H.11
- Ligands: PO4.11
11 PLIP interactions:7 interactions with chain E, 4 interactions with chain F- Hydrophobic interactions: E:I.223, E:V.224
- Hydrogen bonds: E:Q.169, E:Q.169, E:R.171, E:R.171, F:H.11
- pi-Stacking: E:F.165, F:F.10
- Water bridges: F:R.51, F:R.51
181.15: 15 residues within 4Å:- Chain E: F.10, H.11
- Chain F: T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, V.224, E.230
- Ligands: PO4.14
10 PLIP interactions:2 interactions with chain E, 8 interactions with chain F- Hydrogen bonds: E:H.11, F:G.99, F:Q.169, F:Q.169, F:R.171, F:R.171
- pi-Stacking: E:F.10, F:F.165
- Hydrophobic interactions: F:I.223, F:V.224
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bu, W. et al., Structural basis for inhibition of Escherichia coli uridine phosphorylase by 5-substituted acyclouridines. Acta Crystallogr.,Sect.D (2005)
- Release Date
- 2005-07-05
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x K: POTASSIUM ION(Non-covalent)
- 6 x 181: 1-((2-HYDROXYETHOXY)METHYL)-5-(PHENYLTHIO)PYRIMIDINE-2,4(1H,3H)-DIONE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bu, W. et al., Structural basis for inhibition of Escherichia coli uridine phosphorylase by 5-substituted acyclouridines. Acta Crystallogr.,Sect.D (2005)
- Release Date
- 2005-07-05
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F