- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x K: POTASSIUM ION(Non-covalent)
- 6 x BBB: 1-((2-HYDROXYETHOXY)METHYL)-5-(3-(BENZYLOXY)BENZYL)-6-HYDROXYPYRIMIDINE-2,4(1H,3H)-DIONE(Non-covalent)
BBB.2: 15 residues within 4Å:- Chain A: T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, V.224, M.237
- Chain B: F.10, H.11, R.51
13 PLIP interactions:5 interactions with chain B, 8 interactions with chain A- Hydrophobic interactions: B:F.10, A:I.223
- Hydrogen bonds: B:H.11, A:T.97, A:Q.169, A:Q.169, A:R.171, A:R.171
- Water bridges: B:R.51, B:R.51, A:T.97
- pi-Stacking: B:F.10, A:F.165
BBB.3: 17 residues within 4Å:- Chain A: F.10, H.11, R.51
- Chain B: T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, V.224, E.230, P.232, M.237
13 PLIP interactions:10 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:F.165, B:P.232, A:F.10
- Hydrogen bonds: B:T.97, B:T.97, B:Q.169, B:Q.169, B:R.171, B:R.171, A:H.11
- Water bridges: B:T.97
- pi-Stacking: B:F.165, A:F.10
BBB.5: 17 residues within 4Å:- Chain C: T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, V.224, E.230, P.232, M.237
- Chain D: F.10, H.11, R.51
14 PLIP interactions:4 interactions with chain D, 10 interactions with chain C- Hydrogen bonds: D:H.11, D:R.51, C:T.97, C:T.97, C:Q.169, C:Q.169, C:R.171, C:R.171
- Water bridges: D:R.51, C:T.97
- pi-Stacking: D:F.10, C:F.165
- Hydrophobic interactions: C:I.223, C:P.232
BBB.6: 17 residues within 4Å:- Chain C: F.10, H.11, R.51
- Chain D: T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, V.224, E.230, P.232, M.237
14 PLIP interactions:10 interactions with chain D, 4 interactions with chain C- Hydrophobic interactions: D:I.223, D:P.232, C:F.10
- Hydrogen bonds: D:T.97, D:T.97, D:Q.169, D:Q.169, D:R.171, D:R.171, C:H.11
- Water bridges: D:T.97, C:R.51
- pi-Stacking: D:F.165, C:F.10
BBB.8: 15 residues within 4Å:- Chain E: T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, V.224, M.237
- Chain F: F.10, H.11, R.51
11 PLIP interactions:8 interactions with chain E, 3 interactions with chain F- Hydrophobic interactions: E:I.223, F:F.10
- Hydrogen bonds: E:T.97, E:Q.169, E:Q.169, E:R.171, E:R.171, F:H.11
- Water bridges: E:T.97
- pi-Stacking: E:F.165, F:F.10
BBB.9: 18 residues within 4Å:- Chain E: F.10, H.11, R.51
- Chain F: I.72, T.97, T.98, G.99, F.165, Q.169, R.171, Y.198, E.199, M.200, I.223, V.224, E.230, P.232, M.237
12 PLIP interactions:9 interactions with chain F, 3 interactions with chain E- Hydrophobic interactions: F:F.165, F:I.223, F:P.232, E:F.10
- Hydrogen bonds: F:T.97, F:Q.169, F:Q.169, F:R.171, F:R.171, E:H.11
- pi-Stacking: F:F.165, E:F.10
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bu, W. et al., Structural basis for inhibition of Escherichia coli uridine phosphorylase by 5-substituted acyclouridines. Acta Crystallogr.,Sect.D (2005)
- Release Date
- 2005-07-05
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x K: POTASSIUM ION(Non-covalent)
- 6 x BBB: 1-((2-HYDROXYETHOXY)METHYL)-5-(3-(BENZYLOXY)BENZYL)-6-HYDROXYPYRIMIDINE-2,4(1H,3H)-DIONE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bu, W. et al., Structural basis for inhibition of Escherichia coli uridine phosphorylase by 5-substituted acyclouridines. Acta Crystallogr.,Sect.D (2005)
- Release Date
- 2005-07-05
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F