SMTL ID : 1u28.1

R. rubrum transhydrogenase asymmetric complex (dI.NAD+)2(dIII.NADP+)1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-1-mer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 22 residues within 4Å: Chain A: P.126, R.127, I.128, S.129, Q.132, D.135, S.138, G.179, V.180, G.181, V.182, D.202, V.203, R.204, G.234, A.236, Q.247, T.264, A.265, L.266, P.273, L.275 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.127, A:I.128, A:V.180, A:V.180, A:V.182, A:V.203, A:R.204, A:R.204, A:L.266, A:L.266 Water bridges: A:S.141, A:A.183 Salt bridges: A:R.127 NAD.2: 12 residues within 4Å: Chain B: G.179, V.180, G.181, V.182, D.202, V.203, R.204, T.264, A.265, L.266, P.273, L.275 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:V.180, B:V.180, B:V.182, B:V.203, B:R.204, B:R.204, B:L.266, B:L.266 Water bridges: B:A.183

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain B: R.15, Q.75, H.99, E.296, N.322 Ligands: GOL.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:R.15, B:H.99, B:N.322 Water bridges: B:R.15, B:Q.75, B:Q.75, B:E.296, B:E.296 GOL.4: 8 residues within 4Å: Chain B: R.10, Q.75, R.76, H.99, L.100, G.101, N.105 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.10, B:Q.75, B:R.76, B:R.76

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.5: 27 residues within 4Å: Chain B: Q.132 Chain C: G.54, Y.55, G.56, V.59, A.60, V.87, A.88, G.89, R.90, M.91, P.92, G.129, A.130, N.131, D.132, V.133, K.164, R.165, S.166, A.168, S.169, G.170, Y.171, G.189, D.190, A.191 23 PLIP interactions: 22 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:Y.55, C:G.56, C:G.89, C:G.89, C:N.131, C:N.131, C:D.132, C:D.132, C:D.132, C:D.132, C:V.133, C:K.164, C:R.165, C:S.166, C:Y.171, C:D.190, C:D.190, C:A.191, B:Q.132 Salt bridges: C:R.90, C:K.164, C:R.165 pi-Stacking: C:Y.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mather, O.C. et al., Active-site conformational changes associated with hydride transfer in proton-translocating transhydrogenase. Biochemistry (2004)

Release Date

2005-01-18

Peptides

NAD(P) transhydrogenase subunit alpha part 1: AB
NAD(P) transhydrogenase subunit beta: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

NAD(P) transhydrogenase subunit alpha part 1

NAD(P) transhydrogenase subunit beta

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