SMTL ID : 1ubp.1

CRYSTAL STRUCTURE OF UREASE FROM BACILLUS PASTEURII INHIBITED WITH BETA-MERCAPTOETHANOL AT 1.65 ANGSTROMS RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-3-3-3-mer

Ligands

6 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 9 residues within 4Å: Chain C: H.137, K.220, H.222, H.249, H.275, G.280, D.363 Ligands: NI.2, BME.3 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.249, C:H.275 NI.2: 6 residues within 4Å: Chain C: H.137, H.139, K.220, D.363 Ligands: NI.1, BME.3 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.137, C:H.139, C:D.363 NI.5: 9 residues within 4Å: Chain F: H.137, K.220, H.222, H.249, H.275, G.280, D.363 Ligands: NI.6, BME.7 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:H.249, F:H.275 NI.6: 6 residues within 4Å: Chain F: H.137, H.139, K.220, D.363 Ligands: NI.5, BME.7 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.137, F:H.139, F:D.363 NI.9: 9 residues within 4Å: Chain I: H.137, K.220, H.222, H.249, H.275, G.280, D.363 Ligands: NI.10, BME.11 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:H.249, I:H.275 NI.10: 6 residues within 4Å: Chain I: H.137, H.139, K.220, D.363 Ligands: NI.9, BME.11 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:H.137, I:H.139, I:D.363

6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 13 residues within 4Å: Chain C: H.139, A.170, K.220, H.222, H.249, H.275, G.280, D.363, A.366, M.367 Ligands: NI.1, NI.2, BME.4 No protein-ligand interaction detected (PLIP) BME.4: 4 residues within 4Å: Chain C: C.322, H.323, A.366 Ligands: BME.3 1 PLIP interactions: 1 interactions with chain C Water bridges: C:K.169 BME.7: 13 residues within 4Å: Chain F: H.139, A.170, K.220, H.222, H.249, H.275, G.280, D.363, A.366, M.367 Ligands: NI.5, NI.6, BME.8 No protein-ligand interaction detected (PLIP) BME.8: 4 residues within 4Å: Chain F: C.322, H.323, A.366 Ligands: BME.7 1 PLIP interactions: 1 interactions with chain F Water bridges: F:K.169 BME.11: 13 residues within 4Å: Chain I: H.139, A.170, K.220, H.222, H.249, H.275, G.280, D.363, A.366, M.367 Ligands: NI.9, NI.10, BME.12 No protein-ligand interaction detected (PLIP) BME.12: 4 residues within 4Å: Chain I: C.322, H.323, A.366 Ligands: BME.11 1 PLIP interactions: 1 interactions with chain I Water bridges: I:K.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benini, S. et al., The complex of Bacillus pasteurii urease with beta-mercaptoethanol from X-ray data at 1.65-A resolution. J.Biol.Inorg.Chem. (1998)

Release Date

1999-03-02

Peptides

UREASE: ADG
UREASE: BEH
UREASE: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

B
B

E
B

H
B

C
C

F
C

I
C

UREASE

UREASE

UREASE

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