SMTL ID : 1uca.1

Crystal structure of the Ribonuclease MC1 from bitter gourd seeds complexed with 2'-UMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x U2P: PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER(Non-covalent)

U2P.1: 9 residues within 4Å: Chain A: Q.9, H.34, N.71, V.72, L.73, F.80, H.83, E.84, K.87 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.73 Hydrogen bonds: A:Q.9, A:N.71, A:V.72, A:L.73 Salt bridges: A:H.34, A:H.83, A:K.87 pi-Stacking: A:F.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, A. et al., Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity. Biochem.Biophys.Res.Commun. (2000)

Release Date

2003-04-29

Peptides

Ribonuclease MC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease MC

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