SMTL ID : 1ukj.1

Detailed structure of L-Methionine-Lyase from Pseudomonas putida

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Y.114, V.339, S.340, Q.349, R.375 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.114, A:S.340, A:Q.349 Water bridges: A:Y.114, A:N.161, A:R.375 Salt bridges: A:R.375 SO4.2: 5 residues within 4Å: Chain B: Y.114, V.339, S.340, Q.349, R.375 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.340 Water bridges: B:G.115, B:G.115, B:R.375, B:R.375 Salt bridges: B:R.375 SO4.3: 4 residues within 4Å: Chain B: V.32, H.250 Chain C: Q.34 Chain D: H.250 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D, 2 interactions with chain C Water bridges: B:Q.34, C:Q.34, C:Q.34 Salt bridges: B:H.250, D:H.250 SO4.4: 6 residues within 4Å: Chain C: Y.114, V.339, S.340, L.341, Q.349, R.375 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.340, C:Q.349 Water bridges: C:R.375, C:R.375 Salt bridges: C:R.375 SO4.5: 6 residues within 4Å: Chain D: Y.114, K.211, V.339, S.340, Q.349, R.375 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:Y.114, D:S.340 Water bridges: D:Y.114, D:N.161, D:Q.349, D:Q.349 Salt bridges: D:R.375

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Misaki, S. et al., Detailed structure of L-Methionine -Lyase from Pseudomonas putida. To be Published

Release Date

2004-10-19

Peptides

Methionine gamma-lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Methionine gamma-lyase

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