SMTL ID : 1uuo.1

Rat dihydroorotate dehydrogenase (DHOD)in complex with brequinar

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

1 x BRF: 6-FLUORO-2-(2'-FLUORO-1,1'-BIPHENYL-4-YL)-3-METHYLQUINOLINE-4-CARBOXYLIC ACID(Non-covalent)

BRF.1: 17 residues within 4Å: Chain A: Y.14, L.18, M.19, L.22, Q.23, P.28, A.31, H.32, A.35, T.39, L.44, V.110, R.112, Y.332, I.336, P.340 Ligands: FMN.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.14, A:L.22, A:A.31, A:H.32, A:A.35, A:L.44, A:I.336, A:I.336, A:P.340 Hydrogen bonds: A:P.28 Salt bridges: A:R.112

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 25 residues within 4Å: Chain A: A.71, A.72, G.73, K.76, G.95, S.96, N.121, F.125, N.157, N.188, K.231, T.259, N.260, T.261, S.281, G.282, L.285, V.309, G.310, G.311, L.331, Y.332, T.333 Ligands: BRF.1, ORO.3 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:N.121, A:Y.332 Hydrogen bonds: A:A.72, A:K.76, A:S.96, A:S.96, A:N.157, A:N.188, A:K.231, A:K.231, A:N.260, A:S.281, A:G.282, A:G.311, A:Y.332, A:T.333, A:T.333 Water bridges: A:A.72, A:G.310, A:V.312, A:V.312, A:V.312

1 x ORO: OROTIC ACID(Non-covalent)

ORO.3: 12 residues within 4Å: Chain A: K.76, N.121, R.122, Y.123, G.124, F.125, N.188, S.191, P.192, N.260, T.261 Ligands: FMN.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.125 Hydrogen bonds: A:N.121, A:N.121, A:G.124, A:F.125, A:N.188, A:N.260, A:N.260, A:T.261 Salt bridges: A:K.76

1 x NI: NICKEL (II) ION(Non-covalent)

NI.4: 5 residues within 4Å: Chain A: G.179, P.180, A.182, T.223, R.224 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:A.182, A:R.224

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hansen, M. et al., Inhibitor Binding in a Class 2 Dihydroorotate Dehydrogenase Causes Variations in the Membrane-Associated N-Terminal Domain. Protein Sci. (2004)

Release Date

2004-04-01

Peptides

DIHYDROOROTATE DEHYDROGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DIHYDROOROTATE DEHYDROGENASE

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