SMTL ID : 1uvh.1

X-ray structure of Dps from Mycobacterium smegmatis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-12-mer

Ligands

12 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: D.66, E.70 Chain B: K.36, H.39 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Metal complexes: B:H.39, A:D.66, A:E.70 FE.2: 4 residues within 4Å: Chain A: K.36, H.39 Chain B: D.66, E.70 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Metal complexes: B:D.66, B:E.70, A:H.39 FE.3: 3 residues within 4Å: Chain C: D.66, E.70 Chain D: H.39 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.66, C:E.70 FE.4: 4 residues within 4Å: Chain C: K.36, H.39 Chain D: D.66, E.70 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Metal complexes: D:D.66, D:E.70, C:H.39 FE.5: 4 residues within 4Å: Chain E: D.66, E.70 Chain F: K.36, H.39 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain E Metal complexes: F:H.39, E:D.66, E:E.70 FE.6: 4 residues within 4Å: Chain E: K.36, H.39 Chain F: D.66, E.70 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E Metal complexes: F:D.66, F:E.70, E:H.39 FE.7: 3 residues within 4Å: Chain G: D.66, E.70 Chain H: H.39 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:D.66, G:E.70 FE.8: 4 residues within 4Å: Chain G: K.36, H.39 Chain H: D.66, E.70 3 PLIP interactions: 2 interactions with chain H, 1 interactions with chain G Metal complexes: H:D.66, H:E.70, G:H.39 FE.9: 4 residues within 4Å: Chain I: D.66, E.70 Chain J: K.36, H.39 3 PLIP interactions: 2 interactions with chain I, 1 interactions with chain J Metal complexes: I:D.66, I:E.70, J:H.39 FE.10: 4 residues within 4Å: Chain I: K.36, H.39 Chain J: D.66, E.70 3 PLIP interactions: 1 interactions with chain I, 2 interactions with chain J Metal complexes: I:H.39, J:D.66, J:E.70 FE.11: 3 residues within 4Å: Chain K: D.66, E.70 Chain L: H.39 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:D.66, K:E.70 FE.12: 4 residues within 4Å: Chain K: K.36, H.39 Chain L: D.66, E.70 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain K Metal complexes: L:D.66, L:E.70, K:H.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ceci, P. et al., Reassessment of Protein Stability, DNA Binding, and Protection of Mycobacterium Smegmatis Dps. J.Biol.Chem. (2005)

Release Date

2005-02-09

Peptides

STARVATION-INDUCED DNA PROTECTING PROTEIN: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

STARVATION-INDUCED DNA PROTECTING PROTEIN

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