SMTL ID : 1uwu.1

Structure of beta-glycosidase from Sulfolobus solfataricus in complex with D-glucohydroximo-1,5-lactam

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

4 x GOX: (2S,3S,4R,5R)-6-(HYDROXYAMINO)-2-(HYDROXYMETHYL)-2,3,4,5-TETRAHYDROPYRIDINE-3,4,5-TRIOL(Non-covalent)

GOX.1: 13 residues within 4Å: Chain A: Q.18, H.150, W.151, N.205, E.206, Y.322, W.361, E.387, W.425, E.432, W.433, F.441 Ligands: ACT.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.18, A:H.150, A:N.205, A:E.206, A:N.320, A:W.433 Water bridges: A:E.206, A:E.206, A:N.430, A:E.432 GOX.4: 14 residues within 4Å: Chain B: Q.18, H.150, W.151, N.205, E.206, N.320, Y.322, W.361, E.387, W.425, E.432, W.433, F.441 Ligands: ACT.5 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Q.18, B:H.150, B:N.205, B:E.206, B:N.320, B:W.433 Water bridges: B:E.206, B:E.206, B:N.430 GOX.6: 13 residues within 4Å: Chain C: Q.18, H.150, W.151, N.205, E.206, Y.322, W.361, E.387, W.425, E.432, W.433, F.441 Ligands: ACT.7 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:Q.18, C:H.150, C:N.205, C:E.206, C:N.320, C:W.433 Water bridges: C:E.206, C:E.206, C:N.430 GOX.9: 14 residues within 4Å: Chain D: Q.18, H.150, W.151, N.205, E.206, N.320, Y.322, W.361, E.387, W.425, E.432, W.433, F.441 Ligands: ACT.10 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:Q.18, D:H.150, D:N.205, D:E.206, D:N.320, D:W.433 Water bridges: D:E.206, D:E.206, D:N.430

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: Y.322, T.323, H.342, W.361 Ligands: GOX.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:H.342 Hydrogen bonds: A:H.342 Water bridges: A:Y.322 ACT.3: 4 residues within 4Å: Chain A: Y.2, H.410, R.411, N.414 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.410 ACT.5: 5 residues within 4Å: Chain B: Y.322, T.323, H.342, W.361 Ligands: GOX.4 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.322, B:W.361 Water bridges: B:H.342 Salt bridges: B:H.342 ACT.7: 5 residues within 4Å: Chain C: Y.322, T.323, H.342, W.361 Ligands: GOX.6 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:H.342 Water bridges: C:Y.322 ACT.8: 4 residues within 4Å: Chain C: Y.2, H.410, R.411, N.414 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:H.410 ACT.10: 5 residues within 4Å: Chain D: Y.322, T.323, H.342, W.361 Ligands: GOX.9 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:Y.322, D:W.361 Salt bridges: D:H.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gloster, T.M. et al., Structural studies of the beta-glycosidase from Sulfolobus solfataricus in complex with covalently and noncovalently bound inhibitors. Biochemistry (2004)

Release Date

2004-05-20

Peptides

BETA-GALACTOSIDASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

BETA-GALACTOSIDASE

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