SMTL ID : 1uz0.1

Carbohydrate binding module (CBM6cm-2) from Cellvibrio mixtus lichenase 5A in complex with Glc-4Glc-3Glc-4Glc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC-BGC-BGC.1: 13 residues within 4Å: Chain A: Q.13, G.37, W.39, L.40, S.41, A.43, E.73, E.74, A.75, G.76, G.77, G.112, K.114 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: G.16, Y.33, D.35, D.38 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.16, A:Y.33, A:D.35, A:D.38, H2O.2, H2O.2 CA.5: 4 residues within 4Å: Chain A: Q.7, E.9, K.29, N.123 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.9, A:E.9, A:K.29, A:N.123, H2O.2

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: D.35, A.36, G.118 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: P.46, V.47, N.48 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.48, A:N.48, A:N.48 Water bridges: A:T.45, A:P.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pires, V.M.R. et al., The Crystal Structure of the Family 6 Carbohydrate Binding Module from Cellvibrio Mixtus Endoglucanase 5A in Complex with Oligosaccharides Reveals Two Distinct Binding Sites with Different Ligand Specificities. J.Biol.Chem. (2004)

Release Date

2004-03-11

Peptides

CELLULASE B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CELLULASE B

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