- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x KDG: 2-KETO-3-DEOXYGLUCONATE(Non-covalent)
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 15 residues within 4Å:- Chain A: S.193, K.219, G.221, A.222, G.224, F.239, A.243, P.246, A.249, G.250, F.253, N.275, G.278, A.279, A.282
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:R.220, A:G.221, A:A.249, A:G.250, A:N.275
- Water bridges: A:E.196, A:E.196, A:K.219, A:K.219, A:V.241, A:A.243
- Salt bridges: A:K.219, A:K.219
ADP.4: 16 residues within 4Å:- Chain B: K.219, R.220, G.221, G.224, A.225, F.239, V.241, A.243, P.246, A.249, G.250, F.253, N.275, G.278, A.279, A.282
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:R.220, B:G.221, B:V.241, B:G.250, B:N.275
- Water bridges: B:R.167, B:R.167, B:E.196, B:P.246
- Salt bridges: B:K.219
ADP.6: 15 residues within 4Å:- Chain C: S.193, K.219, G.221, A.222, G.224, F.239, A.243, P.246, A.249, G.250, F.253, N.275, G.278, A.279, A.282
13 PLIP interactions:13 interactions with chain C- Hydrogen bonds: C:R.220, C:G.221, C:A.249, C:G.250, C:N.275
- Water bridges: C:E.196, C:E.196, C:K.219, C:K.219, C:V.241, C:A.243
- Salt bridges: C:K.219, C:K.219
ADP.8: 16 residues within 4Å:- Chain D: K.219, R.220, G.221, G.224, A.225, F.239, V.241, A.243, P.246, A.249, G.250, F.253, N.275, G.278, A.279, A.282
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:R.220, D:G.221, D:V.241, D:G.250, D:N.275
- Water bridges: D:R.167, D:R.167, D:E.196, D:P.246
- Salt bridges: D:K.219
ADP.10: 15 residues within 4Å:- Chain E: S.193, K.219, G.221, A.222, G.224, F.239, A.243, P.246, A.249, G.250, F.253, N.275, G.278, A.279, A.282
13 PLIP interactions:13 interactions with chain E- Hydrogen bonds: E:R.220, E:G.221, E:A.249, E:G.250, E:N.275
- Water bridges: E:E.196, E:E.196, E:K.219, E:K.219, E:V.241, E:A.243
- Salt bridges: E:K.219, E:K.219
ADP.12: 16 residues within 4Å:- Chain F: K.219, R.220, G.221, G.224, A.225, F.239, V.241, A.243, P.246, A.249, G.250, F.253, N.275, G.278, A.279, A.282
10 PLIP interactions:10 interactions with chain F- Hydrogen bonds: F:R.220, F:G.221, F:V.241, F:G.250, F:N.275
- Water bridges: F:R.167, F:R.167, F:E.196, F:P.246
- Salt bridges: F:K.219
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ohshima, N. et al., Structure of Thermus thermophilus 2-Keto-3-deoxygluconate kinase: evidence for recognition of an open chain substrate. J. Mol. Biol. (2004)
- Release Date
- 2004-04-14
- Peptides
- 2-KETO-3-DEOXYGLUCONATE KINASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x KDG: 2-KETO-3-DEOXYGLUCONATE(Non-covalent)
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ohshima, N. et al., Structure of Thermus thermophilus 2-Keto-3-deoxygluconate kinase: evidence for recognition of an open chain substrate. J. Mol. Biol. (2004)
- Release Date
- 2004-04-14
- Peptides
- 2-KETO-3-DEOXYGLUCONATE KINASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B