SMTL ID : 1v1t.1

Crystal structure of the PDZ tandem of human syntenin in complex with TNEYKV peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x ASN- GLU- TYR- LYS- VAL: TNEYKV PEPTIDE(Non-covalent)

ASN-GLU-TYR-LYS-VAL.1: 12 residues within 4Å: Chain B: H.101, V.102, G.103, F.104, I.105, F.106, K.107, V.115, D.144, S.145, A.148, L.151 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:F.104, B:I.105, B:I.105, B:D.144, B:A.148, B:L.151 Hydrogen bonds: B:V.102, B:G.103, B:F.104, B:F.104, B:F.106, B:F.106 Water bridges: B:K.107, B:S.145, B:S.145 Salt bridges: B:H.101 ASN-GLU-TYR-LYS-VAL.2: 11 residues within 4Å: Chain A: H.101, V.102, G.103, F.104, I.105, F.106, K.107, V.115, D.144, A.148, L.151 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.104, A:I.105, A:I.105, A:D.144, A:A.148 Hydrogen bonds: A:V.102, A:G.103, A:F.104, A:F.104, A:F.106, A:F.106, A:K.107 Water bridges: A:S.145, A:S.145 Salt bridges: A:H.101

1 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.3: 6 residues within 4Å: Chain A: T.93, M.94, H.95, S.119, R.122, N.123 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:H.95 Hydrogen bonds: A:H.95, A:N.123 Water bridges: A:H.95, A:R.122 Salt bridges: A:H.95, A:R.122 pi-Cation interactions: A:H.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grembecka, J. et al., The Binding of the Pdz Tandem of Syntenin to Target Proteins. Biochemistry (2006)

Release Date

2005-06-14

Peptides

SYNTENIN 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SYNTENIN 1

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