SMTL ID : 1vcz.1

Crystal structure of the RNase NT in complex with 5'-GMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.1: 9 residues within 4Å: Chain A: Y.12, H.43, W.46, P.47, N.48, W.54, K.100, H.101 Ligands: 5GP.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.48, A:K.100 Water bridges: A:H.43, A:N.48, A:H.101 pi-Stacking: A:W.46, A:W.54, A:W.54, A:W.54 pi-Cation interactions: A:W.54 5GP.2: 16 residues within 4Å: Chain A: Q.16, Y.21, H.43, W.46, P.81, S.82, L.83, A.84, F.93, H.96, E.97, K.100, H.101, Y.174, Q.175 Ligands: 5GP.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Q.16, A:Q.16, A:L.83, A:A.84, A:Y.174 Salt bridges: A:H.43, A:H.96, A:K.100, A:H.101 pi-Stacking: A:F.93 pi-Cation interactions: A:H.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawano, S. et al., Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates. to be published

Release Date

2005-04-26

Peptides

RNase NGR3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNase NGR3

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