SMTL ID : 1veq.1

Mycobacterium smegmatis Dps Hexagonal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.98 Å

Oligo State

homo-12-mer

Ligands

12 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: D.66, E.70 Chain J: H.39, H.51 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain J Metal complexes: A:D.66, A:D.66, A:E.70, J:H.39 FE.2: 4 residues within 4Å: Chain B: D.66, E.70 Chain E: H.39, D.55 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain E Metal complexes: B:D.66, B:D.66, B:E.70, E:H.39 FE.3: 5 residues within 4Å: Chain C: D.66, E.70 Chain I: K.36, H.39, D.55 4 PLIP interactions: 1 interactions with chain I, 3 interactions with chain C Metal complexes: I:H.39, C:D.66, C:D.66, C:E.70 FE.4: 3 residues within 4Å: Chain D: D.66, E.70 Chain G: H.39 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain G Metal complexes: D:D.66, D:D.66, D:E.70, D:E.70, G:H.39 FE.5: 4 residues within 4Å: Chain B: H.39, D.55 Chain E: D.66, E.70 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain B Metal complexes: E:D.66, E:D.66, E:E.70, B:H.39 FE.6: 5 residues within 4Å: Chain F: D.66, E.70 Chain L: H.39, H.51, D.55 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain L Metal complexes: F:D.66, F:D.66, F:E.70, L:H.39 FE.7: 6 residues within 4Å: Chain D: K.36, H.39, H.51, D.55 Chain G: D.66, E.70 4 PLIP interactions: 3 interactions with chain G, 1 interactions with chain D Metal complexes: G:D.66, G:D.66, G:E.70, D:H.39 FE.8: 5 residues within 4Å: Chain H: D.66, E.70 Chain K: K.36, H.39, D.55 4 PLIP interactions: 3 interactions with chain H, 1 interactions with chain K Metal complexes: H:D.66, H:D.66, H:E.70, K:H.39 FE.9: 5 residues within 4Å: Chain C: K.36, H.39, D.55 Chain I: D.66, E.70 4 PLIP interactions: 3 interactions with chain I, 1 interactions with chain C Metal complexes: I:D.66, I:D.66, I:E.70, C:H.39 FE.10: 5 residues within 4Å: Chain A: H.39, H.51, D.55 Chain J: D.66, E.70 4 PLIP interactions: 3 interactions with chain J, 1 interactions with chain A Metal complexes: J:D.66, J:D.66, J:E.70, A:H.39 FE.11: 4 residues within 4Å: Chain H: K.36, H.39 Chain K: D.66, E.70 4 PLIP interactions: 3 interactions with chain K, 1 interactions with chain H Metal complexes: K:D.66, K:D.66, K:E.70, H:H.39 FE.12: 5 residues within 4Å: Chain F: K.36, H.39, D.55 Chain L: D.66, E.70 4 PLIP interactions: 3 interactions with chain L, 1 interactions with chain F Metal complexes: L:D.66, L:D.66, L:E.70, F:H.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roy, S. et al., X-ray analysis of Mycobacterium smegmatis Dps and a comparative study involving other Dps and Dps-like molecules. J.Mol.Biol. (2004)

Release Date

2004-06-29

Peptides

starvation-induced DNA protecting protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

starvation-induced DNA protecting protein

Related Entries With Identical Sequence