SMTL ID : 1vey.1 (1 other biounit)

Crystal Structure of Peptide Deformylase from Leptospira Interrogans (LiPDF) at pH7.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: Q.53, C.101, H.143, E.144, H.147 Ligands: EPE.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.101, A:H.143, A:H.147, H2O.1 ZN.3: 6 residues within 4Å: Chain B: Q.53, C.101, H.143, E.144, H.147 Ligands: EPE.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.101, B:H.143, B:H.147, H2O.1

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 16 residues within 4Å: Chain A: G.46, V.47, G.48, R.70, Y.71, T.74, F.97, W.98, E.99, G.100, C.101, L.102, Y.136, I.139, E.144 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:V.47, A:G.48, A:G.48, A:W.98, A:L.102, A:Y.136 Salt bridges: A:R.70, A:H.143 EPE.4: 16 residues within 4Å: Chain B: G.46, V.47, G.48, R.70, Y.71, T.74, F.97, W.98, E.99, G.100, C.101, L.102, Y.136, I.139, E.144 Ligands: ZN.3 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:V.47, B:G.48, B:G.48, B:Y.71, B:W.98, B:L.102 Salt bridges: B:R.70, B:H.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Z. et al., Novel conformational states of peptide deformylase from pathogenic bacterium Leptospira interrogans: implications for population shift. J.Biol.Chem. (2005)

Release Date

2005-08-23

Peptides

Peptide deformylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Peptide deformylase

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