- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 8 x FMT: FORMIC ACID(Non-functional Binders)
FMT.2: 5 residues within 4Å:- Chain A: R.80, W.121, I.133, K.137, Y.141
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.137
- Water bridges: A:R.80
FMT.3: 6 residues within 4Å:- Chain A: G.106, F.165, N.166, E.167, T.168
- Chain B: R.7
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.167, A:E.167, A:T.168, B:R.7, B:R.7
FMT.4: 9 residues within 4Å:- Chain A: G.48, L.49, Q.53, C.101, L.102, H.143, E.144, H.147
- Ligands: ZN.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.53, A:L.102, A:E.144
- Water bridges: A:G.48
FMT.7: 9 residues within 4Å:- Chain B: G.48, Q.53, C.101, L.102, H.143, E.144, H.147
- Ligands: ZN.5, FMT.8
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.53, B:L.102
FMT.8: 10 residues within 4Å:- Chain B: G.46, V.47, G.48, R.70, Y.71, G.100, C.101, L.102
- Ligands: GLY.6, FMT.7
7 PLIP interactions:6 interactions with chain B, 1 Ligand-Ligand interactions- Hydrogen bonds: B:V.47, B:G.48, B:R.70, B:R.70, B:Y.71, B:L.102, G.6
FMT.9: 5 residues within 4Å:- Chain B: N.84, V.86, Q.120, W.121, Q.128
1 PLIP interactions:1 interactions with chain B- Water bridges: B:F.129
FMT.10: 1 residues within 4Å:- Chain B: H.173
No protein-ligand interaction detected (PLIP)FMT.11: 5 residues within 4Å:- Chain A: P.11, K.15
- Chain B: H.173, N.174, V.175
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:V.175, A:K.15
- Water bridges: B:V.175
- 1 x GLY: GLYCINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhou, Z. et al., Unique structural characteristics of peptide deformylase from pathogenic bacterium Leptospira interrogans. J.Mol.Biol. (2004)
- Release Date
- 2004-12-21
- Peptides
- Peptide deformylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 8 x FMT: FORMIC ACID(Non-functional Binders)
- 1 x GLY: GLYCINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhou, Z. et al., Unique structural characteristics of peptide deformylase from pathogenic bacterium Leptospira interrogans. J.Mol.Biol. (2004)
- Release Date
- 2004-12-21
- Peptides
- Peptide deformylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B