SMTL ID : 1vfz.1

Crystal Structure of the Kif1A Motor Domain Complexed With ADP-Mg-VO4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

1 x VO4: VANADATE ION(Non-covalent)

VO4.1: 5 residues within 4Å: Chain A: M.210, N.211, E.212, R.216, G.262 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.212, A:R.216 Water bridges: A:N.211, A:E.212, A:E.267

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.104, D.248 Ligands: ADP.3 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.104, H2O.1, H2O.4, H2O.4, H2O.4

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 14 residues within 4Å: Chain A: R.11, R.13, P.14, S.58, Y.67, T.99, G.100, A.101, G.102, K.103, S.104, Y.105, K.110 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.58, A:Y.67, A:Y.67, A:G.100, A:G.102, A:K.103, A:S.104, A:Y.105, A:K.110 Water bridges: A:R.11, A:K.103, A:K.103, A:S.104, A:S.104, A:S.104, A:Q.115 Salt bridges: A:K.103 pi-Stacking: A:Y.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nitta, R. et al., KIF1A Alternately Uses Two Loops to Bind Microtubules. Science (2004)

Release Date

2004-08-10

Peptides

PROTEIN (Fusion protein consisting of Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C and A HIS TAG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (Fusion protein consisting of Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C and A HIS TAG

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