SMTL ID : 1vg0.1

The crystal structures of the REP-1 protein in complex with monoprenylated Rab7 protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: L.232, L.233, Y.234, G.580, N.581 Ligand excluded by PLIP

1 x GER: GERAN-8-YL GERAN(Non-covalent)

GER.2: 11 residues within 4Å: Chain A: P.272, C.273, S.274, R.275, L.292, M.293, V.300, F.333, I.338, L.359, L.362 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.272, A:P.272, A:L.292, A:F.333, A:F.333, A:L.359

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain B: T.22, D.63 Ligands: GDP.4 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:T.22, H2O.17, H2O.17, H2O.17, H2O.17

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.4: 18 residues within 4Å: Chain B: D.16, S.17, G.18, V.19, G.20, K.21, T.22, S.23, F.33, S.34, N.125, K.126, D.128, L.129, S.155, A.156, K.157 Ligands: MG.3 27 PLIP interactions: 27 interactions with chain B Hydrogen bonds: B:D.16, B:G.18, B:V.19, B:G.20, B:K.21, B:T.22, B:S.23, B:S.23, B:S.34, B:E.68, B:N.125, B:K.126, B:K.126, B:A.156, B:K.157 Water bridges: B:K.21, B:K.21, B:K.21, B:T.22, B:T.22, B:T.22, B:T.64 Salt bridges: B:K.21, B:D.128 pi-Stacking: B:F.33, B:F.33 pi-Cation interactions: B:K.126

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 5 residues within 4Å: Chain A: R.398 Chain B: Q.71, S.101, W.102, E.105 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.71 Water bridges: A:R.398

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rak, A. et al., Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease. Cell(Cambridge,Mass.) (2004)

Release Date

2004-07-20

Peptides

Rab proteins geranylgeranyltransferase component A 1: A
Ras-related protein Rab-7: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Rab proteins geranylgeranyltransferase component A 1

Ras-related protein Rab-7

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