SMTL ID : 1vg8.4 (3 other biounits)

GPPNHP-Bound Rab7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.22, T.40 Ligands: GNP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.22, A:T.40, H2O.1, H2O.3

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 24 residues within 4Å: Chain A: D.16, S.17, G.18, V.19, G.20, K.21, T.22, S.23, F.33, S.34, N.35, Y.37, T.40, T.64, A.65, G.66, N.125, K.126, D.128, L.129, S.155, A.156, K.157 Ligands: MG.1 29 PLIP interactions: 29 interactions with chain A Hydrogen bonds: A:S.17, A:G.18, A:V.19, A:G.20, A:K.21, A:K.21, A:T.22, A:T.22, A:S.23, A:S.23, A:S.34, A:Y.37, A:T.40, A:T.64, A:G.66, A:N.125, A:K.126, A:K.126, A:A.156, A:K.157 Water bridges: A:T.22, A:K.38, A:T.40, A:T.40, A:Q.67, A:Q.67 Salt bridges: A:D.128 pi-Stacking: A:F.33, A:F.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rak, A. et al., Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease. Cell(Cambridge,Mass.) (2004)

Release Date

2004-07-20

Peptides

Ras-related protein Rab-7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Ras-related protein Rab-7

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