SMTL ID : 1vsd.1

ASV INTEGRASE CORE DOMAIN WITH MG(II) COFACTOR AND HEPES LIGAND, HIGH MG CONCENTRATION FORM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.15, D.72 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.15, A:D.72, H2O.1, H2O.2, H2O.3, H2O.4 MG.3: 2 residues within 4Å: Chain B: D.15, D.72 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.15, B:D.72, H2O.174, H2O.175, H2O.176, H2O.177

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 6 residues within 4Å: Chain A: P.24, S.26, W.27, G.45, R.46, V.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.47 Water bridges: A:S.26 Salt bridges: A:R.46 EPE.4: 6 residues within 4Å: Chain B: P.24, S.26, W.27, G.45, R.46, V.47 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.47 Water bridges: B:S.26 Salt bridges: B:R.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bujacz, G. et al., The catalytic domain of avian sarcoma virus integrase: conformation of the active-site residues in the presence of divalent cations. Structure (1996)

Release Date

1996-04-03

Peptides

INTEGRASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

INTEGRASE

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