SMTL ID : 1vsf.1

ASV INTEGRASE CORE DOMAIN WITH MN(II) COFACTOR AND HEPES LIGAND, HIGH MG CONCENTRATION FORM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 2 residues within 4Å: Chain A: D.15, D.72 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.15, A:D.72, H2O.1, H2O.1, H2O.1, H2O.1 MN.3: 2 residues within 4Å: Chain B: D.15, D.72 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.15, B:D.72, H2O.6, H2O.6, H2O.6, H2O.6

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 6 residues within 4Å: Chain A: P.24, S.26, W.27, G.45, R.46, V.47 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.47 Water bridges: A:R.46, A:R.46 Salt bridges: A:R.46 EPE.4: 6 residues within 4Å: Chain B: P.24, S.26, W.27, G.45, R.46, V.47 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.47 Water bridges: B:R.46, B:R.46 Salt bridges: B:R.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bujacz, G. et al., The catalytic domain of avian sarcoma virus integrase: conformation of the active-site residues in the presence of divalent cations. Structure (1996)

Release Date

1996-04-03

Peptides

INTEGRASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

INTEGRASE

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