SMTL ID : 1vsv.1 (4 other biounits)

Crystal Structure of holo-glyceraldehyde 3-phosphate dehydrogenase from Cryptosporidium parvum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 24 residues within 4Å: Chain A: N.28, G.29, F.30, G.31, R.32, I.33, N.53, D.54, P.55, F.56, M.57, A.98, K.99, S.117, T.118, G.119, F.121, S.141, A.142, C.173, A.204, N.339, E.340, Y.343 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.33, A:Y.343 Hydrogen bonds: A:N.28, A:F.30, A:R.32, A:I.33, A:K.99, A:N.339 Water bridges: A:G.31, A:G.34, A:R.35, A:N.53, A:N.53, A:G.119, A:S.141, A:E.340, A:E.340 NAD.2: 23 residues within 4Å: Chain B: N.28, G.29, F.30, G.31, R.32, I.33, N.53, D.54, P.55, F.56, M.57, K.99, S.117, T.118, G.119, F.121, S.141, A.142, C.173, A.204, N.339, E.340, Y.343 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:I.33, B:Y.343 Hydrogen bonds: B:N.28, B:F.30, B:F.30, B:R.32, B:I.33, B:N.53, B:K.99, B:N.339 Water bridges: B:G.31, B:G.34, B:G.119, B:S.141 pi-Stacking: B:F.56 NAD.3: 23 residues within 4Å: Chain C: N.28, G.29, F.30, G.31, R.32, I.33, N.53, D.54, P.55, F.56, M.57, K.99, S.117, T.118, G.119, F.121, S.141, A.142, C.173, A.204, N.339, E.340, Y.343 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:I.33, C:Y.343 Hydrogen bonds: C:N.28, C:F.30, C:F.30, C:R.32, C:I.33, C:N.53, C:K.99, C:N.339 Water bridges: C:G.31, C:G.34, C:G.119, C:S.141, C:A.204, C:A.204 NAD.4: 25 residues within 4Å: Chain D: N.28, G.29, F.30, G.31, R.32, I.33, N.53, D.54, P.55, F.56, M.57, A.98, K.99, S.117, T.118, G.119, F.121, S.141, A.142, C.173, T.203, A.204, N.339, E.340, Y.343 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:I.33, D:Y.343 Hydrogen bonds: D:N.28, D:F.30, D:R.32, D:I.33, D:N.53, D:K.99, D:N.339 Water bridges: D:G.31, D:G.34, D:G.119, D:S.141, D:A.204, D:N.205, D:E.340

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cook, W.J. et al., An unexpected phosphate binding site in Glyceraldehyde 3-Phosphate Dehydrogenase: Crystal structures of apo, holo and ternary complex of Cryptosporidium parvum enzyme. BMC STRUCT.BIOL. (2009)

Release Date

2009-03-24

Peptides

Glyceraldehyde-3-phosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Glyceraldehyde-3-phosphate dehydrogenase

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